KEGG   Emiliania huxleyi: EMIHUDRAFT_350223
Entry
EMIHUDRAFT_350223 CDS       T02915                                 
Name
(RefSeq) histone deacetylase RpdA/Rpd3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ehx  Emiliania huxleyi
Pathway
ehx03082  ATP-dependent chromatin remodeling
ehx03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ehx00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    EMIHUDRAFT_350223
   03083 Polycomb repressive complex
    EMIHUDRAFT_350223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ehx03036]
    EMIHUDRAFT_350223
Enzymes [BR:ehx01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     EMIHUDRAFT_350223
Chromosome and associated proteins [BR:ehx03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     EMIHUDRAFT_350223
   HDAC complexes
    Sin3A-HDAC complex
     EMIHUDRAFT_350223
    BRAF-HDAC complex
     EMIHUDRAFT_350223
    REST complex
     EMIHUDRAFT_350223
    SHIP complex
     EMIHUDRAFT_350223
    MiDAC complex
     EMIHUDRAFT_350223
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     EMIHUDRAFT_350223
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    EMIHUDRAFT_350223
  Chromatin remodeling factors
   NuRD complex
    EMIHUDRAFT_350223
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 17260695
NCBI-ProteinID: XP_005767055
JGI: Emihu1_350223
UniProt: R1DV38
LinkDB
Position
Unknown
AA seq 372 aa
MSSAATPPQAQQAAPDATLAAERRVTYLLDDHIGVHASPEASLRKPHTVRLTDNLVVDCG
LDKHMTMVRSGGDGWSPAPAATVRRYHTDAYVAFLEKIELHGKEVANEAANYVLNNSVCF
SETAWPYAQIYAGASMHAAELLATGKADIAINWSGGQAHARRDCASGFSYVNDVVLAVLT
LLQSVERVLFINVDSVHASGVEEAFYTTDRVMCVSLHRHGDGYFPGSGGAKDAGERAGKG
HNINLPVERGFSDADLEALLPPVVEAAAARYQPAAVVLLAGTGLLSGDRLGCMNVTLGGY
SKAVECVLALRRPTLLLGGGGYTTSIATRAWAAATSLACGAAPLPLAELRRGHGSRAAES
ARFLASQLSLSG
NT seq 1118 nt   +upstreamnt  +downstreamnt
atgtcaagcgcagccacaccgccgcaagcgcaacaagccgcgccggacgccacccttgca
gcagaacgaagggtcacctacctcctggacgaccacattggggtgcacgcgtcgccagag
gcgtcgctgcgcaagccgcacaccgtcaggctgaccgacaacctggtcgtcgactgcggg
ctggacaagcacatgaccatggtgcggagcggcggcgacggctggtcgccagcgcctgcc
gcgacggtccgccgctaccacacggacgcgtacgtcgcctttctcgagaagattgagctg
cacggcaaggaggtggccaatgaggctgcaaactacgtgctcaacaactcggtctgcttc
agcgagacggcctggccgtacgcgcagatctacgcgggcgcatccatgcacgccgccgag
ctcctcgccaccggcaaggcggacatcgccatcaactggagcggggggcaggcgcacgcg
cggcgtgactgcgcgtcgggcttctcgtacgtcaatgacgtggtgctggccgtgctgacg
ctgctgcagagcgtcgagcgtgtgctcttcatcaacgtggactcggtgcacgcgtcgggc
gtcgaggaggccttctacaccaccgaccgcgtcatgtgcgtctcgctgcatcgccacggc
gacggctacttccccggctcgggcggcgcaaaggacgcgggcgagcgggcgggcaagggg
cacaacatcaaccttcccgtcgagcgcggcttcagcgacgccgacctcgaggccctgctc
ccgcccgtcgtcgaggcggcggccgcccgctaccagcctgctgcagtggtgctgcttgcc
ggcacgggcttgctctctggcgaccggctcggctgcatgaacgtcacgctgggcgggtac
agcaaggcggtggaatgcgtgctcgcgctgcgcaggcctacgctgcttctcggcggaggg
gggtacacgacttcgatcgcgacgcgagcttgggcggcggcgacttccctcgcgtgcggc
gcggcgccgctccccctcgctgagctccggcgtggccacgggagccgtgctgctgagagc
gctcggttcctcgcatcgcagctctctctctcgggtag

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