Emiliania huxleyi: EMIHUDRAFT_350223
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Entry
EMIHUDRAFT_350223 CDS
T02915
Name
(RefSeq) histone deacetylase RpdA/Rpd3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ehx
Emiliania huxleyi
Pathway
ehx03082
ATP-dependent chromatin remodeling
ehx03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
EMIHUDRAFT_350223
03083 Polycomb repressive complex
EMIHUDRAFT_350223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ehx03036
]
EMIHUDRAFT_350223
Enzymes [BR:
ehx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
EMIHUDRAFT_350223
Chromosome and associated proteins [BR:
ehx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
EMIHUDRAFT_350223
HDAC complexes
Sin3A-HDAC complex
EMIHUDRAFT_350223
BRAF-HDAC complex
EMIHUDRAFT_350223
REST complex
EMIHUDRAFT_350223
SHIP complex
EMIHUDRAFT_350223
MiDAC complex
EMIHUDRAFT_350223
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
EMIHUDRAFT_350223
Heterochromatin formation proteins
Other heterochromatin formation proteins
EMIHUDRAFT_350223
Chromatin remodeling factors
NuRD complex
EMIHUDRAFT_350223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
17260695
NCBI-ProteinID:
XP_005767055
JGI:
Emihu1_350223
UniProt:
R1DV38
LinkDB
All DBs
Position
Unknown
AA seq
372 aa
AA seq
DB search
MSSAATPPQAQQAAPDATLAAERRVTYLLDDHIGVHASPEASLRKPHTVRLTDNLVVDCG
LDKHMTMVRSGGDGWSPAPAATVRRYHTDAYVAFLEKIELHGKEVANEAANYVLNNSVCF
SETAWPYAQIYAGASMHAAELLATGKADIAINWSGGQAHARRDCASGFSYVNDVVLAVLT
LLQSVERVLFINVDSVHASGVEEAFYTTDRVMCVSLHRHGDGYFPGSGGAKDAGERAGKG
HNINLPVERGFSDADLEALLPPVVEAAAARYQPAAVVLLAGTGLLSGDRLGCMNVTLGGY
SKAVECVLALRRPTLLLGGGGYTTSIATRAWAAATSLACGAAPLPLAELRRGHGSRAAES
ARFLASQLSLSG
NT seq
1118 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcgcagccacaccgccgcaagcgcaacaagccgcgccggacgccacccttgca
gcagaacgaagggtcacctacctcctggacgaccacattggggtgcacgcgtcgccagag
gcgtcgctgcgcaagccgcacaccgtcaggctgaccgacaacctggtcgtcgactgcggg
ctggacaagcacatgaccatggtgcggagcggcggcgacggctggtcgccagcgcctgcc
gcgacggtccgccgctaccacacggacgcgtacgtcgcctttctcgagaagattgagctg
cacggcaaggaggtggccaatgaggctgcaaactacgtgctcaacaactcggtctgcttc
agcgagacggcctggccgtacgcgcagatctacgcgggcgcatccatgcacgccgccgag
ctcctcgccaccggcaaggcggacatcgccatcaactggagcggggggcaggcgcacgcg
cggcgtgactgcgcgtcgggcttctcgtacgtcaatgacgtggtgctggccgtgctgacg
ctgctgcagagcgtcgagcgtgtgctcttcatcaacgtggactcggtgcacgcgtcgggc
gtcgaggaggccttctacaccaccgaccgcgtcatgtgcgtctcgctgcatcgccacggc
gacggctacttccccggctcgggcggcgcaaaggacgcgggcgagcgggcgggcaagggg
cacaacatcaaccttcccgtcgagcgcggcttcagcgacgccgacctcgaggccctgctc
ccgcccgtcgtcgaggcggcggccgcccgctaccagcctgctgcagtggtgctgcttgcc
ggcacgggcttgctctctggcgaccggctcggctgcatgaacgtcacgctgggcgggtac
agcaaggcggtggaatgcgtgctcgcgctgcgcaggcctacgctgcttctcggcggaggg
gggtacacgacttcgatcgcgacgcgagcttgggcggcggcgacttccctcgcgtgcggc
gcggcgccgctccccctcgctgagctccggcgtggccacgggagccgtgctgctgagagc
gctcggttcctcgcatcgcagctctctctctcgggtag
DBGET
integrated database retrieval system