Emiliania huxleyi: EMIHUDRAFT_423307
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Entry
EMIHUDRAFT_423307 CDS
T02915
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ehx
Emiliania huxleyi
Pathway
ehx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EMIHUDRAFT_423307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ehx03041
]
EMIHUDRAFT_423307
Enzymes [BR:
ehx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EMIHUDRAFT_423307
Spliceosome [BR:
ehx03041
]
Complex C
Other components
Step II factors
EMIHUDRAFT_423307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
17281674
NCBI-ProteinID:
XP_005788832
JGI:
Emihu1_423307
UniProt:
R1DLM9
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MTLEPSASSPGVSSLDGTLMSAADREALRLAIEGNYCTVVRGSTGCGKTTQLPQLLLAAG
FGPVCVTQPRRMAAIAAARRVAQERGGEVGGEVGYAIRFEQECGPSTQIKFVTDGVLLRE
AVRDQALSHYGAVVLDEAHERSINTDVLLTVAKQILSGARGPRRLVVASATLDAARFSRF
FRDAPVVEVSSRTFPVTAQPRRVGPGFPGALPDPSPGPFAQLLEADPDGPRLQVHPLHAS
LPSADQARVFRPPPPRTRRLILATNIAETSLTLPGVRTVIDAGVAKEKRYERDRGMEVLS
VVPISQSNAVQRAGRAGRTAAGEVWRLYSEDQLAGMASEPQPEIRRSNLANVVLSLKEMG
ALDWLDPPEPEAVHAALRQLFLLGALDGRGELTAAGAAMAQLPLEPSLSKTMLTAAALGC
RDEAASVCALVCGEEVFCRAGPPWLREAAAESRLHYESADGDHMTLLSAYEDWALVPHYQ
REAWCAERGLQGRALRAAHSVRTQILSLLSKSGPRGGGEEATAAHSAAEARARCRRAICA
GHFMHAARRAHAARAGNEQLLSSATHVVFSELAWVGRLVMQHACAVEPAWLQELTPRLAE
AKRVLRLGGVGGHWRGDGEVGAGAEAGGGGGGRPAGDESGPPGPAAARRNNDATVAAARL
RLEERRKRARLP
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggagccgtcggcatcgtcgcccggagtcagcagcctcgacggcacgctgatg
agcgcggcggaccgcgaggcgctgcggctggccatcgagggcaactactgcacggttgtg
cgcggctcaactggctgcggcaagacgacgcagctgccgcagctgctgctcgccgcgggc
ttcgggccggtctgcgtgacgcagccgcgccggatggcggcgatcgctgccgcgcggcgg
gtcgcgcaggagcgcggcggcgaggtgggcggcgaggtcggctacgccattcgctttgag
caagagtgcgggccgtcgacgcagatcaagttcgtcacggacggcgtgctgctgcgcgag
gcggtccgcgaccaggcgctgtcgcactacggcgcggtcgtcctcgacgaggcgcacgag
cgctcgatcaacacggacgtgctcctcaccgtcgccaagcagatcctctccggggcgcgc
gggccgcgccgcctcgtcgttgcctcggcgacgttggacgcggcccgctttagccgcttc
ttccgcgacgctccggtcgtcgaggtgtcgtcgcgcacgtttcccgtcacggcgcagcct
cgccgcgttgggccgggtttccccggagccttgcctgacccttccccggggccctttgct
cagctcctcgaggcggacccggacgggccgcggctgcaggtgcacccgctgcacgcctcg
ctcccctcggcggaccaggcgcgcgtctttcggccgccgccgccgcgcacgcgccggctc
atcctcgcgacaaacatcgccgagacgtcgctcacgctgccgggcgtgcgcaccgtcatc
gacgccggcgtcgccaaggagaagcggtacgagcgcgaccgcggcatggaggtcctgtcg
gtagtcccgatctcgcagagcaacgcggtgcagcgcgccggccgcgccggccgcacggcg
gcgggcgaggtgtggcggctgtacagcgaggatcagcttgcggggatggcctccgagccc
cagcccgagatccggcggtccaacctcgccaatgtggtcctctcgctcaaggagatgggg
gcgctcgactggctcgacccgcccgagccggaggcggtgcacgcggcgctgaggcagctc
ttcctgctcggcgcgctcgacgggcgcggcgagctcaccgccgccggcgcggcgatggcg
cagctgccgctcgagccgtcgctctcaaagacgatgctcaccgcggcggcgctcggctgc
cgcgacgaggcggcgagcgtgtgtgcgctcgtctgcggcgaggaggtcttttgccgcgcg
ggtccgccgtggctgcgcgaggctgcggccgagtcgcggctgcactacgagagcgccgac
ggcgaccacatgacgctgctctccgcgtacgaggattgggcgctcgtcccgcactaccag
cgcgaggcgtggtgcgcagagcggggtctgcagggccgcgcgctgcgggcggcgcacagc
gtgcgcacccagatcctcagcctgctctccaagtccggccctcgcggcggcggggaggag
gcgacggcggcccactccgcggccgaggcgcgcgcgcgctgccgccgcgccatctgcgcg
ggccactttatgcacgcggcgcggcgggcgcacgccgcgcgggcgggcaacgagcagctg
ctgagcagcgcgacgcacgtcgtcttcagcgagctcgcgtgggtgggccggctggtcatg
cagcacgcgtgcgccgtcgagccagcgtggctgcaggagctcacgccgcggctggccgag
gcgaagcgggtgctccggctcggcggcgtgggggggcactggcgcggcgacggggaggtc
ggcgcgggggcggaggcgggcggaggcggaggcgggcggcccgccggcgacgagtcgggg
ccgcccggcccggccgcggcgcggcgcaacaacgacgccaccgtggccgcggcgaggttg
cggctggaggagcggaggaagcgcgcgcggttgccgtaa
DBGET
integrated database retrieval system
