Escherichia coli O18 K1 H7 IHE3034 (ExPEC): ECOK1_0185
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Entry
ECOK1_0185 CDS
T01997
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
eih
Escherichia coli O18:K1:H7 IHE3034 (ExPEC)
Pathway
eih03030
DNA replication
eih03430
Mismatch repair
eih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECOK1_0185 (dnaE)
03430 Mismatch repair
ECOK1_0185 (dnaE)
03440 Homologous recombination
ECOK1_0185 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eih03032
]
ECOK1_0185 (dnaE)
03400 DNA repair and recombination proteins [BR:
eih03400
]
ECOK1_0185 (dnaE)
Enzymes [BR:
eih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ECOK1_0185 (dnaE)
DNA replication proteins [BR:
eih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ECOK1_0185 (dnaE)
DNA repair and recombination proteins [BR:
eih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ECOK1_0185 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADE88308
LinkDB
All DBs
Position
209843..213325
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDW
LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES
YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL
EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtacacctgcgggtgcacagcgactactcgatgatcgatggc
ctggccaaaaccgcaccgctggtaaaaaaggcggcagcgttgggtatgccagcactggcg
atcaccgatttcaccaacctttgcggtctggtgaagttctacggagcgggacatggcgca
gggattaagcccatcgtcggggcggattttaacgtccagtgcgacctgctgggtgatgag
ttaactcacctgacggtgctggcggcgaacaataccggctatcagaatctgacgttgctg
atctcaaaagcgtatcagcgcgggtacggtaccgccgggccgatcatcgatcgcgactgg
cttatcgaattaaatgaagggttgatccttctttccggcgggcgcatgggcgacgttgga
cgcagtcttttgcgtggtaacagcgcgctggtagatgagtgtgtcgcgttttatgaagaa
cacttcccggatcgctattttctcgagctgatccgcaccggcaggccggacgaagaaagc
tatctgcacgctgcggtggaactggcggaagcacgcggtttgcccgttgtggcgaccaac
gacgtgcgctttatcgacagcagcgactttgacgcacacgaaatccgcgtcgcgattcac
gacggctttaccctagacgatcctaaacgcccgcgtaactattcgccgcagcaatatatg
cgtagcgaagaggagatgtgcgagctttttgccgacattcccgaagcccttgccaacacc
gttgagatagccaaacgttgtaacgtaactgtgcgtctgggtgaatacttcttgccgcaa
ttcccgaccggggacatgagtaccgaagattatctggtcaagcgtgcaaaagaaggcctg
gaagagcgtctggcatttttattccctgacgaggaagaacgtcttaagcgtcgtccggag
tatgacgaacgtctggatactgaacttcaggttatcaaccagatgggcttcccgggttac
ttcctcatcgttatggaatttatccagtggtcgaaagataacggtgtaccggtagggcca
ggccgtggttctggtgcagggtcactggtggcctacgcgttaaaaatcaccgatctcgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgtgaccaggttatcgaacatgtggcggac
atgtacggtcgcgatgcggtatcgcagattatcaccttcggtacgatggcggcgaaagcg
gtgatccgcgacgtaggccgtgtattggggcatccgtacggatttgtcgatcgtatctcg
aaactgatcccgcccgatccgggtatgacgctggcgaaagcgtttgaagccgagccgcag
ctgccggaaatctacgaagcggatgaagaagttaaggcgctgatcgacatggcgcgcaaa
ctggaaggggtcacccgtaacgccggtaagcacgccggtggggtggttatcgcgccgacc
aaaattactgattttgcgccgctttattgcgatgaagagggcaaacatccggtcacccag
tttgataaaagcgacgttgaatacgccgggctggtgaagttcgacttcctcggtttgcgt
acgctcaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaagaatggc
gagccgccgctggatatcgccgcgatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaggacctgatc
aagcgtctgcaacctgactgcttcgaagatatgatcgcactggtggcactgttccgcccc
ggtccgttgcaatcagggatggtggataactttatcgaccgtaaacatggtcgcgaagag
atctcctatccggacgtgcagtggcagcatgaaagcctgaaaccggtactggagccaacc
tacggcatcatcctgtatcaggaacaggtcatgcagattgcccaggtgctttctggttat
accctcggtggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gctaagcagcgttctgtatttgctgaaggtgcagaaaagaacggaatcaacgccgaactg
gcgatgaaaatcttcgacctggtggagaaattcgctggttacggatttaacaaatcgcac
tctgcggcctatgctttggtgtcatatcaaactttatggctgaaagcgcactatccggcg
gagtttatggcggcggtaatgaccgccgatatggacaacaccgagaaggtggtgggcctg
gtggatgagtgctggcggatggggctgaaaatcctgccaccagatataaactccggtctt
taccatttccacgtcaacgacgacggcgaaatcgtgtatggtattggcgcgatcaaaggg
gtaggtgaaggcccgattgaggccatcatcgaagcccgtaataaaggcggctacttccgc
gaactgtttgatctctgcgcccgtaccgacaccaaaaagttaaaccggcgagtgctggaa
aaactgatcatgtctggggcgtttgaccgtcttgggccacaccgcgcggcgctgatgaac
tcgctgggtgatgcgttaaaagcggcagatcaacacgcgaaagcggaagctatcggtcag
gccgatatgttcggcgtgctggccgaagagccggaacaaattgaacaatcctacgccagc
tgccaaccgtggccggagcaggtggtattagatggggaacgtgaaacgttaggtctgtac
ctgacgggacaccctatcaaccagtatttaaaagagattgagcgttatgtcggaggcgta
aggctgaaagacatgcacccgacagaacgtggtaaagtcatcacggctgcggggctcgtt
gttgccgcgcgggttatggtcaccaagcgcggcaatcgtatcggtatctgcacgctggat
gaccgttccgggcggctggaagtgatgttgtttactgacgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggtgggcttaaaatgaccgctcgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctctgggacaattccagtacatctctactatcag
agggcggatgcacgcgcgcgattgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttattaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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