Encephalitozoon intestinalis: Eint_040220
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Entry
Eint_040220 CDS
T02238
Name
(RefSeq) RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ein
Encephalitozoon intestinalis
Pathway
ein03022
Basal transcription factors
ein03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ein00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Eint_040220
09124 Replication and repair
03420 Nucleotide excision repair
Eint_040220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ein03021
]
Eint_040220
03400 DNA repair and recombination proteins [BR:
ein03400
]
Eint_040220
Transcription machinery [BR:
ein03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Eint_040220
DNA repair and recombination proteins [BR:
ein03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Eint_040220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
Tfb4
HMBD
zf-HIT
Motif
Other DBs
NCBI-GeneID:
9699062
NCBI-ProteinID:
XP_003072673
UniProt:
E0S6H8
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All DBs
Position
IV:21883..22905
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AA seq
340 aa
AA seq
DB search
MAKQFSWEQEYKRTWEDRSDRKVNEFNTETGIFYSNNRKGIVRHLHVIIDVSEAIDKSDF
LPTFRTNVAKILEGFIPSFYSENPLSTLSFLSVRDVCVKYISSMDMDIHAFLGQTGSKWF
SLLNGLEGSVEIIKNTTHVKEILVIVASTSTRDPHGYTEVLTKLKVHNIKVHFISLCGEV
TLYKSISKATEGRFYVPVDVGHLSIIMKELSHPTDFNGTTLSLVKIGFPLPVIEPSVCAC
HLEMKSAGYECPVCKTMVCSLPVSCPICNTQLVSTLNLSKSLRFLYPLKPFIEKEGKMCR
ICQSKGGYQCELCKSIFCNSCNGFVHNTLSFCIYCELPYN
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacagttttcctgggaacaggagtataagagaacatgggaagacagaagtgac
agaaaggtaaatgaattcaacacagagacaggaattttctacagtaacaatagaaaggga
atagtaagacatctacatgtaataatagatgtctccgaggcgatagacaaatcggatttc
cttcccacattcaggacaaacgtggcaaagattcttgaggggtttattccttcgttctac
agcgagaatcctttgtccaccctatcgttcctcagcgttagagatgtgtgtgtgaaatat
ataagtagtatggacatggatatacatgctttcctaggccagacaggatctaagtggttt
tccttgcttaacgggctcgagggatcggtggaaatcattaagaatactacacatgttaaa
gaaatcctagtcattgttgcaagcacatcgacccgagatcctcatggatataccgaagtg
cttaccaagctcaaagtacacaacataaaggtccactttatcagcctctgtggagaggtc
accttatacaagtcaatatccaaggctaccgaggggagattttatgttccagtcgatgta
ggccacttatctattataatgaaagaattatcccatcccacagatttcaacgggacaact
ctcagcctagttaagattggatttcctttaccggtaatagagccatctgtatgtgcttgc
cacttagaaatgaagagtgctggatatgaatgcccagtgtgtaagactatggtttgttcc
cttccagtctcatgtccaatatgcaacactcaacttgtgtctaccctgaatctttcaaag
tcattgcgatttctctatccactaaagccattcatcgaaaaggaggggaagatgtgccga
atatgccaaagcaagggaggataccaatgcgagctctgtaaaagtattttttgcaacagt
tgcaacggatttgttcataacaccttgagcttctgcatttactgtgaattaccgtacaac
tag
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