Eumetopias jubatus (Steller sea lion): 114197090
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Entry
114197090 CDS
T07240
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
eju
Eumetopias jubatus (Steller sea lion)
Pathway
eju03030
DNA replication
eju03410
Base excision repair
eju03420
Nucleotide excision repair
eju03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114197090 (LIG1)
03410 Base excision repair
114197090 (LIG1)
03420 Nucleotide excision repair
114197090 (LIG1)
03430 Mismatch repair
114197090 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eju03032
]
114197090 (LIG1)
03400 DNA repair and recombination proteins [BR:
eju03400
]
114197090 (LIG1)
Enzymes [BR:
eju01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114197090 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
114197090 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114197090 (LIG1)
DNA replication proteins [BR:
eju03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114197090 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114197090 (LIG1)
DNA repair and recombination proteins [BR:
eju03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114197090 (LIG1)
NER (nucleotide excision repair)
Other NER factors
114197090 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
114197090 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
114197090
NCBI-ProteinID:
XP_027943744
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MQRSIMSFFYPKKEGKVKKPEKETSNSVRETEPLPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPSSPQVSPPSPVTFPESSPSPSSTSPVDISPAGIPK
RRTARKQLPKRTVQDALQEQGKDESREAKRRKEGDAEAPLESLAEPEVTQKKEAEGEGQP
VTPPEHPETSSAEPLPDSTLEPEVAGKQEAREEDPAEPPARAPKTVSSFFAPRKPATKKE
GREEGPGTARQEEAKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVS
ARLRMVETLSSLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATG
RQLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFTKFRDIARLAGSASTARK
MDIIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEWPPAVVDA
GKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCRLSPGVPLKPM
LAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIIS
RIPKIKLPSVTSFILDAEAVAWDQEKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLI
YLNGESLVREPLSRRRQLLRENFVPTEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLM
VKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAY
DEESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRADGAVAPDHWLDPSAVWE
VKCADLSLSPIYPAARGLVDGEKGVSLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQI
QNQQGADVDSDPEDFY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagacagagccacttccaaaggtggcactgaag
gagcgcaatggagaggtgcctgagagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaagaggaggacgaagccctcacgccctccaaaggc
cagaagcctgcccccagctctccacaagtctcccctcccagccctgtcacatttcccgag
agcagcccctccccctccagcacctctcctgtggacatctccccagcagggatcccaaag
cggcgcacagctcggaagcagcttcctaagcggacggtacaggatgccctgcaggagcag
ggcaaggacgagagcagagaggccaagaggaggaaggagggagacgctgaggccccactg
gaaagcctcgcggagcctgaagtgacccaaaagaaagaagcagaaggggagggccagccc
gtgacaccccctgagcacccagagacctcctcagcagagcccctgccagacagcaccttg
gagcctgaggtggcggggaagcaggaggctcgagaggaagacccggccgagccgcccgcc
agagcgcccaagacggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaa
gggagagaagagggacctggcacagcaagacaggaagaggccaagggacccctggacccc
cccagctacaatcctgccaagaacaactaccatcccatcgacgacgcgtgctggaagcca
ggccagaaggtcccttacctggctgtggcccggacatttgagaagattgaggaggtttct
gctcggctccggatggtggagacgctgagcagcttgctgcgttccgtggtggccctgtca
cctccagacctcctccccgtcctctacctcagcctcaaccgcctcgggccaccgcagcag
ggcctggagcttggcgtcggtgacggcgtcctcctcaaggcggtggcccaggccacaggg
cggcagctggagtctgtcaaggccgaggcggctgagaagggcgacgtggggttggtggcc
gagaacagccgcagcacccagagactcatgctgcccccacctgctctcactgccgccggg
gtcttcaccaagttccgggacatcgcccggctggccggcagtgcgtccacagccaggaag
atggacatcatcaaaggcctctttgttgcctgccgccactcagaagcccgatacattgcc
agagccctgagcggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctc
gcccaggccgtgagcctcacgcccccaggccaagagtggcccccggccgtcgtggatgct
gggaagggcaggacagcggaggcccgaaagacgtggctagaggagcaaggcatgatcctg
aagcagacgttctgcgaggtgcccgacctggaccggatcatccctgtgctgctggagcac
ggcctggagcgcctcccggagcactgcaggctgagcccaggggttcccctgaaaccgatg
ctggcgcaccccacccgcggtgtcagcgaggtcctgaaacgctttgaggaggccgctttc
acctgcgagtacaaatacgacgggcagagggcacagatccacgtcctggaaggcggggag
gtgaagatcttcagcaggaatcaggaagacaataccggaaagtacccggacatcatcagc
cgcatccccaagattaaactcccgtcagtcacatccttcatcctggacgcggaagccgtg
gcttgggaccaggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgc
aaggaggtggatgcggcagagatccaggtgcaggtgtgtctgtatgccttcgacctcatc
tacctcaatggagagtccctggtgcgtgagccgctttcccgacgccggcagcttctccgg
gagaacttcgtgccgacggagggcgagtttgtcttcgccacctccctggacaccaaggac
acagagcagatcgccgagttcctggagcagtctgtgaaagactcctgcgaggggctgatg
gtgaaaaccctggacgtcgatgccacctacgagatcgccaagagatcccacaactggctg
aagctgaagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgatcggc
gcctacctgggccgtggcaagcgggccggccgctatgggggcttcctgctggctgcctac
gacgaggagagtgaggagctccaggccatatgcaagctcggaactggcttcagtgacgag
gagctggaggagcattaccagaggctccaggccctggtgctgcccaccccacgctcttac
gtccgggcggacggcgccgtggcccccgaccactggctggaccccagtgccgtgtgggag
gtgaaatgtgccgatctgtccctgtcccccatctaccctgctgcccggggcctggtggat
ggtgagaagggggtctcccttcgcttccctcgctttatccgcgtccgtgaagacaagaag
cccgaggaggccaccaccagtgcccaggtggcctccctgtacaggaagcagagtcagatt
cagaaccagcagggcgcggacgtggactccgacccagaagatttctactag
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