Eumetopias jubatus (Steller sea lion): 114226594
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Entry
114226594 CDS
T07240
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eju
Eumetopias jubatus (Steller sea lion)
Pathway
eju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114226594 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eju03021
]
114226594 (PCF11)
03019 Messenger RNA biogenesis [BR:
eju03019
]
114226594 (PCF11)
Transcription machinery [BR:
eju03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114226594 (PCF11)
Messenger RNA biogenesis [BR:
eju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114226594 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
114226594
NCBI-ProteinID:
XP_027982548
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDPKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRLKKTEEERPQEAANQHSMKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QTGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGTFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQ
NEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctagagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcacatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagcaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaggacccgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaaggttaaagaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagattggttggaagtagaaataaaatcatcaatggcattgtacaaaagcaggataca
ataacggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcgacacccaaagctgga
aagattcggcaatcaggagttaagcagtcacacatggaagagtttactctaccttccagg
gaagagcggaatgctaagagaagtaataaacaagatattcgagatccaaggagattaaaa
aagactgaagaggaacgaccacaagaagctgcaaatcagcattctatgaagtcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgacgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaaccttcagattcctaaagagttaactcttgcgagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggccttgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgagatttgaaggaccaggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtcggtggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtttgaggttt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggactgcatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggtacaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacagaggcttgaatcagtatctttcaat
cagactggtccatacaatgatccacctggcaatgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagcttctccaatccccttaacagagcttctggacactatttt
gatgaaaagaatcttcagagttcccaatttggaaacttcggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttcttactggtgttgctcagccagtagca
tttggccaaggacaacagtttttgccagttcatccacaaaatcctggaacatttgttcag
aatccttcaggagctcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtctcagcctgattca
gctacaacacaagtgaatgaagttgctgctcagcctccccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttactaattttacagttgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatgagg
tttacaacatcacagacagatgtatacgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacg
gactggatagaatttgaggaaatagctgatttagaagaacgtgcaaagagccagtttttt
gaaaaggtgcacgaagaagtcgtgctcaagactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgccggaccagctggagcagttgagagttgtgaaatctgtcaagaacag
tttgaacaatactgggatgaagaagaggaggaatggcatttaaaaaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcagaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaat
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
