Epidermidibacterium keratini: EK0264_13935
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Entry
EK0264_13935 CDS
T06370
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eke
Epidermidibacterium keratini
Pathway
eke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EK0264_13935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eke03400
]
EK0264_13935 (mfd)
Enzymes [BR:
eke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EK0264_13935 (mfd)
DNA repair and recombination proteins [BR:
eke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EK0264_13935 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHC01275
UniProt:
A0A7L4YPS0
LinkDB
All DBs
Position
2889566..2893297
Genome browser
AA seq
1243 aa
AA seq
DB search
MGEARHWQHTACAGPDRVSPGGRRLIREPRNEPVVGPLCVLADRKELTVAVSSSSSQTAT
TEPVSPAAASSASVAHLRGLIDTVERDPALGSALAGLREGTGGDRILRCLQPLQPFVLGA
ATGAYDHPVLAVTSSNRDAEALVEALSAFLPPEEIGLFPSWETLPHERLSPRADTVGARL
AVLRRLAHPDEHGALRIIVAPIRSVLQPLVAGLGELTPVQFGKGDERPLDEVVTDLVAIG
YDRVDLVEKRGEFAVRGGILDVFPPIEDHPIRVEFWGDDVDELRYFSVADQRSLGEHPER
LWAPPCRELLLTDDVRARAAALLTEHPDLGEMLEPISLGNAVEGMESLIPALVDPDNGME
LLVEQLPAQSLIVLCDPQRIAARAVEMVQSSQEFLDASWAVAADGADSPIDLGASTYRDI
DEVHDAASAAGQMWWQLDPLASDEEGEIDVHPLEQYVGDPERLMGDIRRQVREDWTVVLT
FAGHGTAERAVERLAESDIGARAVTAIVEPPSPGSVTVTTANLGAGFLAPSARLALITES
DITASRGQAVRQMGKMPSRRRRGSIDPLELSAGGYVVHEQHGVGKYVEMVRRQVGGAERE
YLIVEYAASKRGQPGDRLFVPTDQLGQITRYVGGEMPSLNKLGGSDWQKTKGRARKAVKE
IAGELVRLYAARTSAPGYAFGPDTPWQRELEDAFPYSETADQLAAIDEVKTDMRKSVPMD
RVILGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYQTFAERFSQFPVKLAQL
SRFTPKSDADSLMEGIADGSIDVAIGTHRLLQPQTRFKDLGLVIVDEEQRFGVEHKEYLK
QLRTAVDMLTMSATPIPRTLEMSLTGIREMSTMLTPPEERHPILTFVGAFSQKQVVAAIR
RELLRDGQVFYLHNRVQSIEKAAANIRALVPEARVAVAHGQMSEDQLEKIMVGFWEREYD
VLVATTIIEAGLDIPNANTLIVERADLLGLSQLHQIRGRVGRSRERAYAYFLYPPDRPLG
DTAYDRLATIAQNSELGAGMAVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRLVGEAV
AEYKGESPDETVDIRVDLPVRAHVPHDYIDGERLRLEVYRKIATITDESSAAEVRAELDD
RYGTPPTEVENLIAISLLRHQALLAGVHEIAAQGKLVRFSPMKLGDAAQLKLSRLYKGST
YKEGVRLVSIPRPTDGSGVASPPLRDRAVIDWASRVLTDLTQT
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggcgcggcattggcagcatacggcgtgcgctgggccggatcgggtgtcgccg
ggcgggcgtagactgatccgtgaaccccgcaacgagcccgttgtggggccgttgtgcgtg
cttgctgaccgaaaagagctgaccgtagccgtgtcttcgtcgtcctcccagacagccact
actgagccggtgtcacctgccgccgcgtcctcggcgtcggttgcgcatttgcgcgggctg
atcgacaccgtcgagcgcgatccggctctgggtagcgccctggcggggctgcgagagggg
accggcggcgaccgcatcttgcgctgcctgcagccgctgcagccgttcgtcctcggtgcg
gcgactggcgcctacgaccacccagtgctggcggtgacctcaagcaaccgggacgccgag
gcacttgtcgaggcattgtcggccttcttgccgccagaggagatcgggctctttccctca
tgggagacgctgccgcatgagcggctctcgccgcgggccgacacggtcggtgcgcggctt
gcggtgctacgccggctcgcgcacccggacgagcacggtgcgctgcggatcatcgtcgcg
ccgatccgttcagtgctgcagccgctggttgccgggctcggcgagctcacaccggtccag
ttcggcaagggtgacgagcgtccactggatgaagtggtcaccgatctcgtcgcgattggc
tacgaccgggtcgatctggtggagaagcgcggggagttcgccgtacgcggcggaatcttg
gatgtgtttccgccgatcgaggatcacccgatccgcgtggagttctggggtgacgatgtc
gacgagctgcgctacttctccgttgcggaccagcgctcgctgggcgagcacccagagcgg
ctctgggcaccgccgtgccgcgagctgttgctcaccgatgacgtgcgggctcgcgcggcc
gcgctgctgaccgagcaccccgaccttggcgagatgctcgagccgatcagcctcggcaac
gcggtcgagggcatggagtcgctcattcccgcgctcgtcgacccggacaacgggatggag
ctgctggtcgagcagctgccagcgcagtcgctgatcgtgctgtgcgatccgcaacgcatc
gcggcacgcgcggtcgagatggtccagtccagccaggagttcctggacgcgtcgtgggcg
gttgctgccgacggtgccgacagcccgatcgatctgggcgcgtcgacgtaccgcgacatt
gacgaggtgcacgatgccgcaagtgcggctggtcagatgtggtggcagctcgacccactc
gccagtgacgaagagggagagatcgacgtacatccccttgagcagtacgtcggcgatccg
gagcggttgatgggcgacatccgtcgccaggtgcgtgaggactggaccgtcgtactcacc
tttgccgggcacggcacggctgagcgcgcggtcgagcggttggccgagtcggatatcggt
gcgcgtgccgtgacggcgatcgtcgagccgccgtcgccgggcagcgtcaccgtcaccacg
gccaacctcggcgccggattccttgcgccgtcggcacgtttggcactgatcaccgaatcc
gacatcaccgcatcgcgtggccaggcggtgcggcagatgggcaagatgccgtcgcgtcgg
cggcgcggcagcatcgacccgctggagctgtcggccggcggctacgtcgtgcatgagcag
cacggcgtcggcaagtacgtcgagatggtgcgtcggcaggtgggcggcgcggagcgtgaa
tacctgatcgtcgagtacgccgcctccaagcgcggccagccgggcgaccggctgtttgtc
ccgaccgaccagcttgggcagatcacccgctacgtcggcggtgagatgccgagcctgaac
aagctcggcggctcggactggcagaagacgaagggtcgggcccgcaaggcggtcaaggag
atcgccggtgagctggtgcgcctctatgccgcgcgtacgtcggcgccgggttacgcgttc
ggaccggatacgccatggcagcgcgagcttgaagacgcgttcccgtattcggagaccgcg
gaccagctcgctgccatcgacgaggtcaagaccgacatgcgcaagagcgtgccaatggac
cgcgtgatcttgggcgatgtcggctacggcaagaccgagatcgccgtacgcgcggcgttc
aaggcggtgcaggacggcaagcaggtcgccgtgctcgtgccgacgactttgcttgcgcag
cagcactatcagacatttgccgagaggttttcgcagttcccggtgaagctggctcaactg
tcacgcttcaccccgaagtccgatgccgattcgctgatggaggggatcgctgacgggtcg
atcgatgtcgcgatcggcacgcaccggttgctgcagccgcagactcggttcaaggatctg
gggctcgtcatcgtggatgaggagcagcggtttggcgtggagcacaaggagtatctgaag
cagctgcgcacggcggtcgacatgctgacgatgtcggcgacgccgatccctcgcaccttg
gagatgagtctgaccggcatccgcgagatgtcgacgatgttgacgccgccggaggagcgg
catccgatcctgacgttcgtgggtgcgttttcgcagaagcaggtcgtggcggctatccga
cgcgagttgctgcgtgacgggcaggtcttctacttgcataaccgggtgcagtcgatcgag
aaggcggcggccaacatccgggcgctggtacccgaagcgcgggttgcggtggcgcatgga
cagatgagcgaggatcagctcgagaagatcatggtcggcttctgggagcgcgagtacgac
gtactcgtggcgaccacgattattgaggcggggctggatatcccgaatgccaacacgctt
atcgtcgagcgggccgacctgctggggctcagccagctgcaccagattcgcggacgtgtg
gggcggtcgcgtgagcgggcctacgcctacttcctgtatccgccggaccggccgctgggt
gatacggcgtacgaccggcttgccacgatcgcgcagaactccgagctcggcgccgggatg
gccgtcgcgatgaaggacctggagatccgtggggccggcaacttgctgggcggcgagcag
tccggacacatcgccggcgtcgggtttgacctgtacgtgcggttggtcggtgaggcggtc
gcggagtacaagggcgagagtcccgatgagactgtcgatatccgggtcgacctgccggtg
cgcgcgcacgtgcctcatgactacatcgacggcgagcggctccgactcgaggtgtaccgc
aagatcgcgactatcactgacgagtccagcgcagctgaggtccgtgctgagttggatgac
cgctacggtacgccgccgactgaggtggaaaacctgatcgcgatctcgctgcttcgtcac
caggctctgctcgctggcgtgcatgagattgctgctcagggcaagctcgtgcggttcagt
ccgatgaagctcggcgatgctgctcagctgaagctttctcggctgtataagggatcgacg
tacaaggagggtgtccgtttggtgagtattcctcggccaacggacggctccggagtcgcg
agcccgccgctgcgtgatcgtgcggtcatcgactgggcaagccgcgtcctcaccgacctc
acccaaacctag
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