Eutypa lata: UCREL1_10698
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Entry
UCREL1_10698 CDS
T03103
Name
(GenBank) putative atp-dependent rna helicase dob1 protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ela
Eutypa lata
Pathway
ela03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ela00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCREL1_10698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ela03019
]
UCREL1_10698
03041 Spliceosome [BR:
ela03041
]
UCREL1_10698
03009 Ribosome biogenesis [BR:
ela03009
]
UCREL1_10698
03016 Transfer RNA biogenesis [BR:
ela03016
]
UCREL1_10698
Enzymes [BR:
ela01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCREL1_10698
Messenger RNA biogenesis [BR:
ela03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
UCREL1_10698
Spliceosome [BR:
ela03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
UCREL1_10698
Complex C
U4/U6.U5 tri-SnRNP related factors
UCREL1_10698
Ribosome biogenesis [BR:
ela03009
]
Eukaryotic type
Pre-60S particles
Helicases
UCREL1_10698
Transfer RNA biogenesis [BR:
ela03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
UCREL1_10698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
AAA_22
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
EMR62373
UniProt:
M7SDU1
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MDDLFDVFNNQPAAKSKSEPKADSQSSPPAKSKRSKNKSKKRNADGGMKNGDAASAPSVP
EVDMADVQPSSSEEGGIDETVSENQQDSKRRRKDGAAEPVLTDTFETAESRELAAAEGFA
PTKDESALVLSHNIQHQVALPPDLDYEYVPLSEHKPPEEPARSWPFNLDPFQRISISSIE
RDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYREFNEAFGDVGLM
TGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIL
LPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGNGIFLVV
DEKGVFRENNFNKTMQKIEEKKGADPNDIDARSKGKGKNKKFNKGGRDESQADIQKIIKM
IMNKNFNPVIVFNFSKRECEGLALSTSKFAFNDDSEKAMVRKVFTSAIEALSEEDRELPQ
ISNILPLLEKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVIFTK
VTKWDGTTVRPITPSEYIQMAGRAGRRGLDDRGIVIMMIDDKMEPETAKTIVVGQQDRLN
SAFYLGYNMVLNLLRIEAISPEFMLENCFFQFQNTASVAGLEHELMKLQQERDEMPIPDE
TTIKDYYGLRQQISTYTKDMLSIIQHPNHCLEFLQPGRLVQIQDPKTGRDFGWGIILDFI
KRRDPKFGEKEYEPQESYFIDVFLRFDPTCTPFGSLSAKTAMPEGARPSDPSHECIFEAV
PCMLTCIKALSQIRLFMPKDKDKDQDKKVKTREEKEAIRELMYKSLKETERRFPDGIPIL
DPIENMNITDDGFKKLLRKIEVLESRLLANPLHGSPLLPDLWEQYSKKIGIIDDIKAHKK
KIAKAHSIAQLDELKSRKRVLRRLGFINESEVVELKARVACEISSTEGHELLLSELLFNR
FFNELSPELCAAILSVFIFDERLEATPLPDELMKPFTQIQAQARIIAKVSQESKLDVNEE
EYVQGLKWQLVETVYTWAKGKPFAEVCKMTDAFEGSLIRLFRRLEELLRQMAQAGKVMGS
EELTNKFEESLAKIRRDIVATQSLYL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctctttgacgtcttcaacaatcaaccggctgcaaagtcgaaaagcgagccc
aaggccgactcccaatcatctcctcctgcgaagtctaagagatctaagaataagagcaag
aagaggaatgcggatggcggtatgaagaatggggatgctgcatctgccccttctgtccct
gaggtcgacatggccgatgttcagccatcttcctcggaagagggcggcattgacgagaca
gtatctgagaaccaacaagacagcaagcgacggaggaaagacggtgctgcagagccggta
ctgacagataccttcgagactgctgaatcgagagagcttgccgctgccgagggctttgcg
cctaccaaggacgaatctgctcttgtcctgtcgcacaacatccaacatcaagtcgcactc
ccacccgatctcgattacgagtatgttccactctctgaacacaaaccgcccgaggaacca
gccagatcatggccgttcaacctagatccctttcaacgtatatctatctcttccattgaa
cgagatgaaagcgttctagtgtcggcgcatacgagtgctggtaagactgttgtggctgaa
tatgccattgcgcaatgtctcaagaggaaccaacgagtcatctacacaagtcctattaag
gccttaagtaaccaaaagtaccgtgagttcaacgaggcttttggagatgtcggtctcatg
actggtgacgtgaccatcaacccgactgctagttgtctagttatgaccaccgaaattctt
cgttccatgttgtacaggggatcggagattatgcgcgaagtagcctgggtggtattcgac
gaaattcattacatgcgagacaaaacccgtggtgttgtgtgggaggaaaccatcattctt
ttgccagataaggttcgatacgtcttcctgtctgccactatccccaacgctttccaattt
gccgagtggattgccaagatccatcgacaagcatgtcacgtcgtctataccgacttccgg
cctacacctctccagaattacttctttccagctggtggaaatggaatcttccttgtggtg
gacgagaagggtgtcttcagagagaacaacttcaacaagacgatgcagaagattgaagag
aagaaaggagccgatcctaatgacatcgatgcgagatcaaaagggaagggcaaaaataag
aagttcaacaagggaggcagggatgagagtcaagccgatattcagaagatcatcaagatg
atcatgaacaagaacttcaacccggtcatcgtattcaatttcagcaagagagagtgtgag
gggctggccttgagtacttctaaattcgctttcaatgatgatagtgagaaagccatggtt
cggaaagtgtttactagtgccattgaagctctttccgaggaagatcgagagcttccccag
atttcgaatattcttcctcttttggagaagggtataggtgttcatcactctggtctactg
cccatcctcaaggagacgatcgaaattctcttccaggagggcttgatcaaggtccttttc
gccacagaaaccttctccatcggtttgaacatgccggcaaagaccgttatcttcactaaa
gtcacaaagtgggacggtactacagttcgaccaataacaccgtctgagtatattcagatg
gccggacgtgctggtcgaagaggtctcgacgaccgcggaatcgttatcatgatgatcgat
gacaagatggaacccgaaacagcaaaaaccattgttgtcgggcaacaggaccgtcttaac
tctgcattctacctgggctacaacatggttctgaacctactgaggatagaggcgatatca
cccgagttcatgctagaaaactgcttcttccaatttcagaatactgccagcgttgccggt
ctcgaacatgagttgatgaagttacagcaggagagggatgagatgcctatccctgatgaa
acaacgatcaaggactactatggattacgccagcagatctccacatatacgaaggacatg
ctttctatcattcagcatccgaaccactgcctcgaatttctgcaaccaggccgacttgtt
caaattcaggacccgaagacggggagggatttcggttggggtattattctggatttcatc
aagcgcagagaccctaagtttggcgagaaggagtatgaacctcaggagtcatactttatc
gatgtcttccttcgctttgacccgacttgcaccccctttggctctttgagtgccaagaca
gcgatgcctgaaggcgctaggcctagtgatcctagccatgagtgcatcttcgaggccgta
ccttgtatgctaacctgcatcaaagctctgagtcaaattcgattgttcatgcctaaggat
aaggacaaggatcaagacaagaaagtgaagacccgcgaagaaaaagaagcaatcagggag
ttgatgtacaaatcacttaaggagacagaacgacgcttcccggacggcatacccatctta
gaccctattgaaaacatgaacattacggatgatgggtttaagaagctacttcgcaagatc
gaggtgctcgagtctcgtctgctggctaacccccttcacggatcacctctcctgcctgac
ctctgggaacaatactcgaaaaagattggcattatcgatgacatcaaggcccataagaag
aagattgccaaggcccattcgatcgcgcaactcgatgaactcaagtcgagaaagcgagta
ctccgacgccttgggttcatcaacgaatccgaggtcgtggaactgaaggcccgcgtagcc
tgcgagatttcatcgacagaaggacacgagttactactgtcagaactgctgttcaaccga
ttctttaacgagctctcacccgagctatgcgccgccattttgagcgttttcatcttcgat
gaacgactggaggctacgcctctacccgacgaacttatgaagcctttcacgcagatccaa
gcccaggctcgcatcattgctaaggttagccaggagagcaagctcgacgtgaacgaagaa
gagtacgtccaaggtctgaagtggcagctcgtcgagaccgtctacacttgggcaaaggga
aagccgtttgccgaagtctgcaaaatgacggatgccttcgaaggttccctgattcgtcta
ttccgccgcctcgaggagctgttgcgccagatggcgcaggccggaaaggtaatgggtagc
gaggaactgacgaacaaattcgaggagagtttggcgaagatccgccgcgacattgtggct
acccagtctctctacctttaa
DBGET
integrated database retrieval system
