Elizabethkingia sp. M8: JCR23_11920
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Entry
JCR23_11920 CDS
T09429
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eliz
Elizabethkingia sp. M8
Pathway
eliz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eliz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCR23_11920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eliz03400
]
JCR23_11920 (mfd)
Enzymes [BR:
eliz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCR23_11920 (mfd)
DNA repair and recombination proteins [BR:
eliz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCR23_11920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
QQM25597
UniProt:
A0A7T7HAI3
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All DBs
Position
2573480..2576836
Genome browser
AA seq
1118 aa
AA seq
DB search
MQLTSIKNTLLPDLLKKQWGKEIFDTLREKQKISIKGAAGSSMSLLVAEYFVSFHQPVLV
ILDDKEDALYTTAELEELCGKEHVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKA
PKVIVAYAAALSEKVIKKEEFGKFSHTIKVGEQLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEFPFRISFFGNEVDSIRTFDIESQLTQDKVEEFQLVSAIQDVSGDT
SKTSLLGILPKETVMFTRNAFLGVKHIREFYEKAQEVYKTLHQDIKYSEPKAIFVSEEEF
LNEINHFLWADFASEVLKSSRAEIQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKDRLESIFEELEKNIPFKSFASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPDGKDIVLSKLGSSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAY
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTVMDRLICGDVGFGKTEVAIRAAF
KAAVDGKQVALLVPTTILAFQHYRSFKERLKDFPVEVSYLNRFRTAKQKKETLEGLASGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTKLVGFNEEILRDAISYELQRDGQVYFINNRIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSSDSRKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKK
LFNSVKDVNIDTDLELMLPDDYVNSTEERLLLYQKLADVRNATELNRFEYELKDRFGALP
KEAINLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSDRFKKIIQYLGSNP
QHAQLKEKHSPEGNQLMMRKDKITNVDEVNTLLNSILA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattaacttctataaaaaatacgctgttacccgatttattaaagaaacaatggggt
aaagaaatattcgatacactgcgtgaaaaacaaaagattagtataaaaggtgctgcaggt
tcctctatgagtttgctagttgcagaatattttgtgtcattccatcagcctgtgctggta
attctggatgataaagaagatgctttatacactacagcagaactggaagaactttgtggg
aaagagcatgtattgtattttccggcaacttttttggaaccatatcagatagaaaaaact
cagaatgcaaacagagtactgaggacggaggttattaatcagttgaattcgtctaaagca
ccaaaagtaattgtagcttatgcggcagcactttcagaaaaggtaatcaagaaagaagaa
tttggaaagttttcgcacaccataaaggttggagaacaactggattttgattttatagat
gaattactgaaccattataagttcaacaggacagattttgtatcagagcctggtgaattt
tctgtgcgtggagggattatagatgtattttcttatgcatacgagtttccattccggatc
agttttttcgggaatgaggtagatagtatacgtacttttgatatagaaagtcagctgacg
caggataaggtagaggaatttcagctggtgtccgctattcaggatgtttcaggggatacc
tctaaaacatcattattgggaattttacctaaagaaaccgtaatgtttacccggaatgcg
tttttgggagtaaagcacattcgagagttttatgaaaaagcacaggaggtatataaaacc
ctgcatcaggatattaaatacagtgaacctaaagctatttttgtttcggaagaggaattt
ctgaatgaaataaatcattttctatgggcagactttgcttcagaagtattaaaatcttca
cgagctgaaattcagctaaagcttacacagcagccagtttttaataaaaattttgagtgg
ctgattcaggatctggaagataaactggaaaaaggctatgatgcatggatttcattctca
tccgaaaagcaaaaagatcgattggaaagcatttttgaagagctggaaaagaatattcca
tttaaaagctttgcttccgaactgcatgaaggttttgtagataatgaaaataaaatatcg
gtttataccgatcatcagatatttgacagatatcagaggtataaagcgaaaaacgctttt
gccaaaagtgagcaacttaccttaaaagatctgatgtctctgaaagtaggagattatatt
acccatattgatcatggtattggaaaatttatgggattggttaaggttaataataacggg
aaagttcaggagtgttttaaattatcttataagaatggagatttattatatgtgagtatc
catgcacttcataaaatatcaaagtataatggtccagacggaaaggacattgtgttgagt
aagttaggatcttccgcatggaagtccctgaagcagaaaaccaaagcaagagttaaacag
attgcatttgacctgattaagctttatgcacaaaggaaaagtgcaaaaggttttgcttat
tcaccagacggatatatgcagaatgagctggaagcttcctttatttatgaagatactccg
gatcaggaaaaagctacaatggatgtaaaagccgatatgcaagccgatacagttatggat
cgtttgatttgtggtgatgtaggatttgggaaaacagaagtggctatacgtgcagccttt
aaagctgctgtagatgggaagcaggtagcgcttctggtgcctacaacgattttagcattt
cagcattacagaagttttaaggaaagacttaaagatttccctgtagaggtatcttacctt
aaccgtttcagaacagcaaaacagaagaaagaaacgttggaaggattagcttccggcaaa
atagatattgtaattggtacacatcagttagttggggctagtgtaaagtttaaggatttg
ggattactgattattgatgaagaacataaatttggcgtagctataaaggataagctgaaa
actatgaaaaccaatattgatacattaacacttactgcaacacctattccgagaacatta
cagttctctctcatggcagcgcgggatctttcagttattaaaacaccgccgcctaaccgt
cagccagtagataccaaattggtaggtttcaacgaagaaattctgagagatgccattagt
tatgaattacaaagagacggtcaggtttattttattaataacagaatagaaaaccttaaa
gaaatagcaggtcttatccagagactggttccggatgctcgggttattacagggcatggg
cagatggatggtaagcaattggaggcgaatatgatggattttatggaaggtaaatatgat
gttctggtttctacaacgattgtggaaagtgggctcgatgtacctaatgccaatacaatt
ttcattaatgatgctcagcgtttcggtatggcagatttgcaccagatgcgtggacgtgtg
gggcgtagtaacagaaaagcattttgttaccttattacaccaccaatggatttggtttca
tcagattcccgtaagcgtttggaagctattgagcagttttcagatttgggtagtggtttc
catattgcgatgaaggacttggaaatccgtggagcgggggatttattaggtggagatcag
agtggctttatcaatgaaatgggcttcgatacctatcagaaaattatgcaggaagctctg
gaagaacttaaggatgaagatatggaaggccttttccaaaatgaagaagagcgcaaaaag
cttttcaactctgttaaggatgtgaatattgatactgatttagagctgatgcttccggat
gattatgtaaatagtacagaagagcgattgttgttatatcaaaaactggcagatgtaagg
aatgccacagaacttaatcgttttgaatatgaacttaaagaccgtttcggagcattgcca
aaagaagcgattaacctactgaagagtatcgaactgaaatggctggcagcggatataggt
ttcgataagattgttatgaagaacggaattttccttgggtactttccgggtaatccacaa
gataagttttatcaaagcgacagatttaaaaagattattcaatatctcggttctaatccg
caacatgcacaacttaaagaaaaacattcaccagaaggtaatcagttaatgatgcgtaaa
gataaaataacaaatgtggatgaggttaatacattgctaaatagtatattggcttaa
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