Enhydra lutris kenyoni (northern sea otter): 111143778
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Entry
111143778 CDS
T05871
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03013
Nucleocytoplasmic transport
elk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111143778
03015 mRNA surveillance pathway
111143778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elk03019
]
111143778
Enzymes [BR:
elk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111143778
5.6.2.5 RNA 5'-3' helicase
111143778
Messenger RNA biogenesis [BR:
elk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111143778
mRNA cycle factors
Common to processing body (P body) and stress granule
111143778
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111143778
NCBI-ProteinID:
XP_022353344
UniProt:
A0A2Y9J0Z4
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcactctc
cccagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtaggcgcgggcgcgggagctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaggatacctattacactaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggaacagctgcgggcccggcagatcaccgcc
cagcagatcaacaagctggaagagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcagcacgtgctcctgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagttggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatagccattgagcttcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggattttgtgtggaagtccacctcattcgataggatgcagagtgcattgaaa
acgtttgccgtggatgagacgtctgtctcgggctacatctaccataagctgctcgggcat
gaggtggaggacgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctc
cccgacctcaaccactcccaggtttatgctgtcaagactgtgctgcagagaccgctgagt
ttgatccagggaccaccaggcacagggaagacagtgacctctgccaccatcgtctaccac
ctcgctcggcagggcaatgggcccgtgctcgtctgtgctccaagtaacatagctgtggac
cagctgactgagaagatccaccagactgggctgaaggtcgtgcggctttgcgccaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccggagctgcagaagctgcagcagctgaaggacgagacgggggagctgtct
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaagcggccaaggcgggactgtctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgccccatccgcctgcaggtccagtaccggatgcaccccgcgctc
agcgccttcccttccaacatcttctacgagggctccctccagaacggcgtcactgcagct
gaccgagtaaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagattgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagctgctgaaggcaggggccaagcccgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctatcaggaggtggagatcgccagtgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaatgtggccctgactagagcaaggtat
ggggtcattatcgtgggcaacccgaaggccctgtccaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggccgctgaataacctgcgcgag
agcctcatgcagttcagcaagcccaggaagcttgtcaacactatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatccccggatcagtctacgat
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcgggccccagccacgtggccgccatgaacattcccatccccttcaatctggtc
atgccccccatgccaccgccagggtacttcggacaagcaaacgggccggcggcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatcttcccaatagccaggccagccaagacgtggcgtcacagccg
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
