Esox lucius (northern pike): 105008930
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Entry
105008930 CDS
T04894
Symbol
col19a1
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X5
KO
K24340
collagen type XIX alpha
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105008930 (col19a1)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105008930 (col19a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105008930
NCBI-ProteinID:
XP_012989334
LinkDB
All DBs
Position
LG05:6676084..6834552
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AA seq
1108 aa
AA seq
DB search
MCFLLKWTVFLWTVNAIPCTTGMAVNERIENSRCPPLNIDKGRFSYSFNGPQPEFTGFDL
TETFLQRKGTVREERSSFRLGSSPLIKPTESVFPNGLSSEYSVVATFRLRKTTKKDRWYL
WRIFDQTGNTQVSIVLDGAKRAMEFSAQSLLKKSLHYTFRSRDLHALFDRQWHRLGVAVQ
SSVVSIYVDCKLTEKRLTDEKDDIDLGGHTLIATRMEDGRPVDIELQHMLVYCDPYLAEM
ENCCEVAGSACELSSTGLGPAGVTPDPLVPAGTGPLPGMLSQPVLVQRSQPASDPCQCSG
EKGDQGLPGLAGLPGQKGDQGEKGEMGESGLTGTPGQKGDQGASGFSGLDGLPGPKGEAG
LNGSNGIDGTLGDKGSTGEPGVEGKPGVNGLKGDPGRSGPIGPKGDKGDMGAQGPPGPTI
EKGRLKGDQGLPGLPGQPGVPGKEGKRGRRGKTGEPGPRGLPGGKGDMGVPGEKGDQGDP
GQPGGDGVSGIKGQKGEEGPRGLPGPVMTAHGLRHLSVSEGEAKEKGQKGEMGDPGERGF
QGPQGLKGSLGPPGPKGEPGPEGKGGSQGLIGLPGVAGEKGDLGVPGRDGLKGDKGDSGG
AMGPPGLPGPKGEPGEPGAGNQQGETVTPGARGSRGPKGERGVPGVPGDAGEKGEPGRGV
EGPPGPVGPRGERGMEGSRGPPGFSGPAGIPGREGPPGREGPPGPPGPPGEPTALPILGD
VSVLLKNACSVCQARVPGLPGQKGEKGTLGAPGVEGLVGEKGDPGARGPLGNPGKEGPKG
VKGERGFPGPSGEKGDEGSPGVPGLPGTTGRTGPPGVMGRPGPMGQSGTKGERGSEGSPG
RPGPPGPPGGPYVEGNGMSSLYKLQGGGAIAGPPGEPGPPGPKGDEGRAGDPGAMGLPGL
EGLPGSKGDQGLSGTPGIPGPSGKPGARGEPGTPGEPGDRGPLGETGFPGPEGPQGVPGR
AGKDGIPGYEGATGRPGDRGSKGERGDPGIPGERGVQGERGRTGDPGIVGPVGPRGLPGD
PGPPGPVASPSPLNDANSLEEIKMFIRNEVLRVFEERLSSFAMQKTPAAILAAQVRQGPP
GPPGNDGSPGPPGEAGPSGPQDEELDGE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttcttgctaaaatggactgtttttctctggactgtaaatgctattccctgcact
actggaatggcagtgaacgaaagaatagaaaactcgagatgtcctcctttaaacatcgac
aagggaaggttctcctacagttttaatggtccacagccggagttcacaggttttgacctg
acggagacgtttctccagaggaaggggacagtaagagaggaaaggtcatcgttccggcta
ggaagcagccccctcatcaagccaacagaatcggtgttccccaacggtctttccagtgaa
tactctgtggtcgccaccttccggctgcggaaaaccaccaagaaggatcgctggtatctg
tggcggatatttgaccaaacaggaaacactcaggtgtccatagtgttagacggcgctaaa
agagcgatggagttctcagcccagagcctcctgaagaaaagcctccattacacgttcagg
agccgagacctgcacgccctgttcgaccgccagtggcacagactgggcgtggccgtccag
agcagcgtcgtgtccatctacgtcgactgtaaactgacggagaagaggctgacggacgag
aaggatgacatcgacctcggcggacacacgctgatcgccacccggatggaggacgggcgg
cctgtagatattgaactccaacatatgctggtgtactgcgacccatacctggcggagatg
gagaactgctgtgaagtggcaggatccgcgtgtgagctgagcagtacgggccttggtcct
gctggggtgacccccgacccgctggtccccgctggaaccggtccgctccccgggatgctc
tcccagccagtcctggtccaacggtcccagccagccagtgacccatgtcagtgttcagga
gagaagggtgatcaaggtctaccaggcttggcaggacttccagggcagaaaggtgaccaa
ggagaaaagggagagatgggggaaagtgggttgaccggaaccccaggccagaagggcgac
cagggggcttctgggttctcaggtctggatgggcttcctggaccaaagggggaggccgga
ttgaatgggtctaacgggattgatgggacattgggtgataagggatccacgggggagcct
ggcgtggaaggaaaacctggagtcaatggtttgaaaggagacccaggaaggtctgggcct
attggccccaaaggtgataaaggggatatgggtgcccaaggccccccaggtccaactatt
gagaaagggagacttaagggagatcagggtttgccgggcctgccgggtcaaccaggggtt
ccgggcaaagagggcaaaaggggtcgtagagggaagacaggggaacctggacccagaggc
ttgcctggagggaaaggtgacatgggcgtccccggagaaaaaggagatcagggcgatcct
ggtcagccaggtggggatggggtctctgggattaaaggacagaagggtgaagaaggtcca
agaggacttccaggcccggtgatgacagctcatggactgagacatctgtctgtctcggag
ggtgaagcaaaagagaagggacaaaaaggtgaaatgggtgatccgggcgaaagaggattc
caaggacctcagggtttgaagggaagcctaggaccaccaggtccaaagggagaacccggc
ccagagggtaaaggaggttctcaaggcctcatcggactccccggtgttgcaggagagaaa
ggcgacctgggcgtacctggcagagacggccttaaaggagacaagggggactctggtggt
gcgatggggcccccgggcctgcctggacccaagggagagcctggagagccaggagcagga
aaccagcagggcgagacggtgacacctggagccagaggatctcgagggccaaagggtgag
cgtggtgtccctggggtaccaggagatgccggggagaaaggagagcctggtcggggtgtt
gaagggcctcctggcccagttggaccgagaggggagagaggaatggagggctctcgtgga
ccccctgggttctcaggtcctgctgggatcccaggaagggaggggccccctggtagagag
ggtcccccaggtccccctgggcccccgggtgagccaaccgccttgccaatccttggagat
gtgagtgttttgctcaagaatgcctgcagtgtgtgccaggccagagtacccggtctgcct
gggcagaagggcgagaagggaaccctcggcgccccaggagtggaaggcttggtgggagaa
aagggggacccgggagcccgaggacctctgggtaatccaggaaaagaagggcccaagggc
gtgaaaggagagcgaggattccctgggcccagtggagagaaaggagatgagggctctcct
ggagttcctggtttgccaggtacaacaggccgcacaggacccccgggggtgatgggaagg
ccaggaccaatgggccaatctggaaccaaaggagagaggggtagtgaaggctcccctggt
agaccaggcccaccgggtcccccgggtggcccatatgtggagggcaatgggatgagcagt
ctgtacaaacttcagggtgggggagccattgcgggaccccctggggaaccaggtcctccg
gggccaaaaggtgatgaagggagagcgggagatccaggagccatgggtttacctggacta
gaagggctacctggatccaagggtgatcagggtttgtctggaacacctggaataccaggc
ccttcagggaaacctggagctcgtggagagccaggaactcccggggaaccgggtgacagg
ggtccactgggggagacagggttcccaggccctgagggaccccaaggtgttcctggaaga
gctggaaaagatgggatacctggatatgagggagccacaggtcgtccgggcgacagagga
tccaaaggagaacgtggagacccagggattcctggagagaggggagtccagggggagagg
ggaaggacaggagacccgggaatagtgggacctgtcgggcctcggggcctcccaggagac
cccggtcccccgggtccggttgcgtcgccgagccctctgaatgatgccaactccttggag
gaaattaaaatgtttatccgaaatgaagttctgcgggtgtttgaagagagactgtcaagc
ttcgccatgcagaagacgccagcagccattttagcggcgcaggttcgtcaggggcctccc
ggtccccccggcaacgacgggtccccggggcctccaggggaagcgggcccctccggccct
caagatgaagagttggacggagaataa
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