Esox lucius (northern pike): 105031343
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Entry
105031343 CDS
T04894
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105031343 (upf3a)
03015 mRNA surveillance pathway
105031343 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105031343 (upf3a)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105031343 (upf3a)
mRNA cycle factors
P-body specific factors
105031343 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
SUKH_6
Motif
Other DBs
NCBI-GeneID:
105031343
NCBI-ProteinID:
XP_010903995
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Position
LG16:complement(30625138..30633914)
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AA seq
490 aa
AA seq
DB search
MRSEKDQITGAREKSVVEIQFRDIPREQNALSVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFSDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDTERSKWDKTSGHIKSK
DKGQTESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGYCQDRA
KKDSQHPSTYSYCPETSEKVGEKPSKDDREETGSSRKERVRNKVSDKAVLNHQDRGMTQS
EGPHQIGGALPNKDRPAMQLYQPGARNRKRMGSASKGYELPVGHSPEHGAAGRCYEAVAM
GTSSEKSGDE
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatcaccggagcaagggagaaaagtgtcgtcgaaatacaa
ttcagagacattcccagggaacagaacgccttatccgtcaattcaaagcagaaagaagag
aagaaagaggtctttacaaaggtagtaataaggcgacttccacctaacctgtccaaggac
cagctggaagagcagctcagtcctcttccatcctatgactactttgagttcttccctgct
gatcaaagcctctacccacacctgttctccagagcatacatcaacttcaaaaacccggaa
gacatcctgctcttcagcgatcgctttgatggctatgttttcattgataacaaaggccag
gagtaccctgctgtggtagagtttgccccatttcagaaagtctccaagaagaaactcaaa
aagaaagatgcaaaagctggaagtattgaagaagatccagagtatcggcggtttctggag
aactactcctgtgatgaagagaagtccatggccaaccctgaaaccttgctgggagagata
gaggccaagactagggaactcatagccaaacgaacaacacctcttctggagtatatcaaa
aataaaaaacttgagaagcagaggataagagaggagaagagagaggagcggcggcgcagg
gagctggagaagaaaagacagagagaggaagagaagaggaagcgaagagaggaggagcga
cgcaaacgcaaggaggcagataaacagaagaaactgtcagagaaagagatcaagataaag
ctcctgaagaaaagtgaccgggacgatgacatggactctgacaggctcaaggacaaagga
gacagtggggacaccgagaggtccaagtgggacaaaacctctggacacattaagtcaaag
gacaagggtcagacagagagcgataaggagcagagggagcacggccgcaggcagagagac
aaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactacgagtttgac
aagttcatgcggcgcaaggaggagacgaaatggggcaaaggctactgccaggaccgtgca
aagaaagacagccagcaccccagcacctattcttattgccccgaaacaagtgaaaaggtg
ggcgaaaagccaagcaaggatgacagggaggagactggcagtagtaggaaggaacgtgtg
cgaaacaaggttagtgacaaggctgtgttaaaccatcaggacagagggatgacccaatct
gaggggccacaccagataggaggggctctgccaaacaaggaccggccagccatgcagctg
taccagcctggcgctcgcaaccgaaaacgcatgggttcagcaagcaaaggttacgagctc
cctgtcggccactcaccagagcatggggctgcggggcgctgctacgaggcggtcgccatg
ggaacaagctcagagaagagtggagatgaatag
DBGET
integrated database retrieval system
