Candidatus Enterovibrio luxaltus: BTN50_0047
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Entry
BTN50_0047 CDS
T09803
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
elux
Candidatus Enterovibrio luxaltus
Pathway
elux03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTN50_0047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elux03400
]
BTN50_0047
Enzymes [BR:
elux01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTN50_0047
DNA repair and recombination proteins [BR:
elux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTN50_0047
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATF08594
UniProt:
A0A291B6G7
LinkDB
All DBs
Position
1:complement(42781..46245)
Genome browser
AA seq
1154 aa
AA seq
DB search
MIKQIFFDLPAPEKAGDTRILANLHGSALSLTIAHIATQQNRMILLVVPDNQTALKLEPE
IKQFTGCECHIFPDWETLPYDSFSPHQDIISDRIALLYQLPRQRSGILIISVSTLLQRVI
PRSFLMQHAFTVKKGDLISRKNLCDWLELSGYRHVEQVIEHGEYASRDSIIDLYSMGSSQ
PFRIDFFDYRVDTIREFDPVNQRSTQKLNQINLLPAHEFPTDDDAIERFRGRWRERFDAR
REPESIYQQVSKRTWPAGIEYWQPLFFDQTETLFDYLPKNTLLLTSGNINTATQTFLADI
KNRFDQRRVDPLRPLLAPMELWQTNEELFRAFKAYPRIKLKRNIIKERIGHQNAPIRFLP
ELTVNQQHKDPLYAVKKFIKNFTGKIVFSVETIGHREAILDLLSHIKIRPMVCQSLGEAL
QSPTSCSLVIGPAEYGFVSENPAFALICENNLFDAQVIQQRHRINKKTSTNSDILIRNLA
DLQSGQPVVHIEHGVGRYGGLQTLEAGGIKAEYVTLEYQQQSKLYVPVSSLHLISRYSGG
TEESAPLHRLGGETWGKVRKKAAAKVRDVAAELLDVYAKRATKSGFAFKHDRESYLNFCS
GFLFKETPDQSQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRATFLAVNNSKQVAIL
VPTTLLAQQHSEIFRDRFANLAVRVEVLSRFKSVKEQKLILTDAAKGKVDILIGTHKLIQ
DNVCFRDLGLLIIDEEHRFGVRQKEKVKAMRSDVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPLRRLAVKTFICESDNVLIREAMLREIMRGGQVYFLHNDIDSIEKTADALAKLVPE
ARVTIAHGQMRERALERIMSNFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADHFGLAQ
LHQLRGRVGRSHHQAYAYMLTPHPKRMTKDALKRLEAIASLEELGAGFTLATHDLEIRGA
GELLGDEQSGQIQTIGFILYMEMLEQAVKALKEGKEPLLEDLWNQQTYVELRLPAMLPDA
YIPDINTRLSLYKRIASSKTQDDVKELRVELIERFGLLPVAATNLLKVQQIKLDAARLGV
RKIDAHDKGGMIEFTPNAQINPEFLVSLLQSHPSRYRFDGQTKLRIAESLIDSRERVTFI
ETLLIEFANNVLVA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgataaaacaaatattttttgatttacctgcccctgaaaaagcaggtgatacacgcatt
cttgccaaccttcacggttcggctctttctcttactattgcgcatatcgcaacccagcaa
aatcgcatgattttgctggttgtacctgacaaccaaacagcattgaaacttgagcccgag
attaagcagtttacgggttgtgaatgtcatatatttcctgattgggaaacgctaccctat
gatagcttctcgccacatcaggacattatctctgatcgaattgcgcttctataccaacta
ccgcgacagcgaagcggcattctcataatttcggttagcaccttactgcaaagagtcata
cctcgctcttttttgatgcagcatgcattcaccgtcaagaaaggcgatcttatctcacgt
aagaacctgtgtgattggttagaactctcaggctatcgccatgttgaacaagttatcgaa
catggagagtacgctagtcgtgactccattattgatctatattctatgggatctagtcaa
ccttttcgcatagatttttttgattatagggtggatactattcgtgagttcgatcctgta
aaccagcgttcaacgcagaaactgaatcaaattaatcttctaccagcacacgagtttcct
accgacgacgatgcaatagaacgattcagaggacgttggcgcgagcgtttcgacgcacgt
cgcgagccagaatctatttatcaacaagtcagcaaaagaacctggcctgcaggtattgag
tattggcagccattgttctttgatcaaaccgaaactctgttcgactatttacccaaaaac
acattactgctaacctctggaaatattaacacagcaacgcaaacatttttggccgatatt
aagaaccgtttcgatcaacgccgtgtagatccacttcgtccactgttagcaccaatggaa
ctttggcaaactaacgaggagctatttagagcattcaaagcctatccacgcatcaagctg
aagcgtaacattataaaagaaagaatcggtcaccaaaacgcgcctattcgttttctccct
gaactaaccgttaaccaacaacacaaagatccgctctatgcagtaaaaaaatttattaaa
aattttactggcaaaatagtcttttcagtagaaactataggtcatcgtgaagcaatatta
gacttattgtcgcacataaaaatacgcccaatggtttgccaatcgctgggtgaagccctg
cagtctccgacatcatgctctttagtgattggcccagctgaatatggttttgtttctgaa
aatcctgcatttgcattaatttgtgaaaataatttatttgacgcacaagttattcagcaa
cgacatcgcattaataagaaaacctcaaccaacagtgatattttaatccgtaatttagct
gatctgcaatcaggccaacccgttgttcatatagaacacggcgttgggcgttacggtgga
ttgcaaaccttggaagcaggtggcatcaaagccgaatacgtcaccttggaataccagcaa
cagtctaaactttatgtgcccgtttcatcattgcatctgatcagtcgatatagcgggggc
acagaagaatcagcacctttacaccggctgggtggagaaacatggggaaaagtacgcaaa
aaagctgctgcaaaagtacgagatgttgcggcagaactgctcgatgtatacgcaaagcga
gccacaaaatccgggttcgcatttaaacatgaccgcgaatcttatcttaatttttgttct
ggtttcctatttaaagaaacacctgatcaaagtcaagctattaatgcagtgctatctgat
atgtgccagccaattgccatggatcgtttagtgtgtggtgatgttggtttcggtaaaaca
gaagttgctatgcgtgcgacttttcttgcggtaaataatagtaagcaagtagcaatatta
gtaccaaccactcttctagctcaacaacactccgaaatttttcgtgatcgttttgccaat
ttagctgtccgtgttgaagtgctttctcgctttaaatcagtcaaggaacaaaaactgatt
ttgacagatgcagcaaaaggcaaggttgatattcttataggtacacataaattaattcaa
gataacgtgtgctttcgagatctcggcttgttgatcattgatgaagaacatcgctttgga
gttcgtcaaaaagaaaaagtcaaagcaatgcgctcagatgtcgatatcttgacattaacc
gcaacacccattcctcgaactctgaacatggctatgagtggcatgcgagatctttctatt
atcgccacaccgcccttacgtcgactcgcagtcaaaacctttatatgcgaaagtgataac
gtactgattagagaagcaatgctgcgtgaaataatgcgcggtgggcaagtatatttttta
cacaacgacatagacagcattgaaaaaacagcagatgcattggctaagctggtgccagaa
gctcgtgttaccattgcacatggtcagatgcgagagcgcgcattggaacgcatcatgtcc
aatttttatcatcaacgatttaatgtgctagtatgcaccaccatcattgaaacaggtata
gatgttccaaccgcaaataccatcatcatggatcgtgctgaccactttggtttagcacaa
ctgcatcaattaagagggcgtgttggacgttctcatcaccaagcttatgcttacatgctc
accccgcatcctaaacgcatgaccaaagatgccctaaaacgtttagaggctatagcttct
ttggaagagttgggcgctggtttcactttagcaacccatgaccttgaaattcgaggggct
ggtgagttactgggtgacgagcaaagtggccaaatccagacgattggttttatcctttac
atggaaatgttggaacaagcagttaaagcacttaaagaaggcaaagaaccattacttgaa
gatctgtggaaccaacaaacctatgttgaacttcgtctaccagccatgctaccagatgcc
tatattccggacattaacacgcgtttatcgctatataaacgcatcgcaagttctaaaact
caagatgatgtgaaagagttacgtgttgaattgattgaaagatttggtttactccctgtt
gcggcaacaaacttgcttaaggttcagcaaataaaactagatgcagcaaggcttggagtc
cgaaaaattgatgctcatgataaaggtggcatgattgaatttactccaaatgctcaaatt
aatcctgaatttttggtaagtttgctacaatctcaccctagtcgttaccgtttcgatgga
caaaccaaacttagaattgctgagtcgctaattgatagccgtgaacgagtcacgtttatc
gagactttactaatagaatttgctaataatgtgttggttgcctaa
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