Epinephelus lanceolatus (giant grouper): 117253517
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Entry
117253517 CDS
T07331
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03013
Nucleocytoplasmic transport
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117253517
03015 mRNA surveillance pathway
117253517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117253517
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117253517
5.6.2.5 RNA 5'-3' helicase
117253517
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117253517
mRNA cycle factors
Common to processing body (P body) and stress granule
117253517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117253517
NCBI-ProteinID:
XP_033476904
LinkDB
All DBs
Position
5:complement(19728025..19747405)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
gcggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaaggccagactcagagccagctggacagtcaggttaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacgtattacaccaaagacctgcct
gtgcacgcatgcagctactgtggtatccatgatccagcgtgtgttgtgtactgtaataca
agcaagaagtggttctgtaatggacgtggaaacacatctggcagtcacatcgtgaaccac
ttggtgagagccaaatgcaaagaggtgacgctgcataaagacgggccacttggagagacg
gtgctggagtgttacaactgcggctgccgcaacgtcttcctcttgggtttcatccctgcc
aaggctgattccgtggtggtgctactttgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcacaatggcaaccactgatccaggaccgctgctttctg
tcctggctggtgaagatcccatcggagcaggagcagcttcgggcccgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaaacccggagtggacgaggagccccagcatgtgctgctgcgctatgaggacgct
taccagtaccaaaacatctttggccctttggtcaaactggaggcggactacgacaagaag
cttaaggagtcccagacccaagacaatattacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgtttgcggtacaagggagacctggccccactgtggaaaggcatcggc
catgtcatcaaagtccctgacaactatggggatgaaattgccattgagttgaggagcagt
gttggagcgcctgtggaaatcccccacaacttccaggtggactttgtgtggaagtccacg
tcgtttgacaggatgcagagcgccctgaagacgtttgcggtggacgagacttccgtgtct
ggctacatttaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcctgacctcaatcactcacaggtgtatgct
gtgaagaccgtgctgcagaggcccctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccactatcgtctaccacctgtcccgacaaggcaatggaccagttctg
gtgtgtgctcccagtaacattgccgtggatcagttgactgagaagattgacaagactgga
cttaaggtcgtccggctgtgtgccaagagccgagaggccatcgagtcaccagtgtccttc
ctggctttgcacaaccagatcagcaacatggatagtatgccggagcttcagaagctgcag
cagctgaaggatgagacgggcgagctgtcgtctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaacgctgacgttatctgttgtacctgcgtc
ggggctggagacccccgcctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccggagtgtatggtgcccgtggtgcttggagccaagcagctcatt
ctggtgggtgatcactgccagctggggcctgtggtgatgtgtaagaaagcagccaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcatccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggcgtcactgcagctgaccgcatcaagaagggctttgacttccag
tggccgcagccggacaagcctatgttcttctacgtgactcagggtcaggaggagattgcc
agctctgggacctcctaccttaacaggacggaggctgccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccagatcggtatcatcaccccatacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgtccgtgccaatgagcaccagggcatcggtttcctgaatgacccacgtcgt
ctaaacgtggcgctgaccagagccaagtatggtgtgatcattgtgggaaaccccaaagcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaagtcctc
gtggagggaccgctcaacaacctgcgggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctggaggacgttttatgagcactgcgatgtacgatgcccgt
gaagccctcatccccggctccgcctatgaccgcagcaatgctgccggacgcccgtccaac
atgtactttcaaactcacgaccagatcgggatgattggggcaggccctggtcacatggcc
gccatgaatcttcccatacccttcaacctggtgatgccaccaatgcctccgcccagttac
ctgggtcagaccaacggcccggctgcaggtcgtggagctatgaagggtaagcctggacgt
ggtgggcggcagagggtccgcgggtcggcacaccagggtgccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgacgcag
ggctacatctccatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctgtctcaggacagctacctgggtgatgagttcaagtcccaaatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcataccagcatggtggggtgactggactgtca
cagtattag
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integrated database retrieval system
