Epinephelus lanceolatus (giant grouper): 117256314
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Entry
117256314 CDS
T07331
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117256314 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ely03041
]
117256314 (dhx38)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117256314 (dhx38)
Spliceosome [BR:
ely03041
]
Complex C
Other components
Step II factors
117256314 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117256314
NCBI-ProteinID:
XP_033481549
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All DBs
Position
1:complement(33394529..33415567)
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AA seq
1261 aa
AA seq
DB search
MDDDVSMHRLEGTDPSAQVGGLIVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQTDAGADERSRKKSKVSSYKDWEENKSDSGSDEEDDDKDRSAKKESLASRKYRVTGS
ETPSNPGGVSEEFRRRHQQREKDRREHGVYASSKEDKNRERDRERSRDKGRDRRSERDER
DSSHGRGSSSSRSERSERSDRSERSQRDGWSERISRGSKRDEPLTPQHRPRDSFTPSRSN
WEEDDSGYASSRHSQWESPSPAPSHRESDRSERSHRSGRESERRDRSVRGRYPDDTPLPT
PSYKYNEWANDRKHLGSTPRLSQGKGRKEEGVGGIVFDNEDEKDQWEEDQKQADRDWYMM
DEGYDEFHNPFTTTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQ
RLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIIARKGSQ
LVRKHREQKERKKAQHKHWELAGTKLGDIMGIKKTEEEDTSGGKTVGEDGKVDYRTEQKF
ADHMKEKSEASSEFAKKKSLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQL
TQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLI
KYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSA
TMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMIGDILI
FMPGQEDIEVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVAT
NIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQC
YRLYTQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMY
QLWILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFY
RPKGREEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNEHFIHTKAMRKVREVR
SQLKDIMVQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTS
SLFGMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGRSRQENRRRA
KEEITNMEEEMSMAEEQLRARREEQEKKNSTGSVKSLKICTPGRKEEAPMTPRRTPARFG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgatgtgtccatgcacaggctggaaggcactgatccatcggctcaagttggc
ggactcatagtaaagaagaagagcgctgctgcagagcctcatgtttttcgggcacccact
ccacgcacctccttgctgggcttggatctgctggcagcccagaagaggaaggaacgtgag
agtaaggaacagacagatgctggtgctgatgagagaagtagaaagaagtcaaaggtttcc
tcctacaaagactgggaggaaaataaaagtgactcagggtctgatgaagaagacgatgat
aaggacaggagtgctaagaaggagagtcttgccagcaggaagtatcgtgtgactggctcc
gagacaccttcaaaccccggaggggtcagtgaagagttccgacgcagacaccagcagagg
gagaaagacaggcgtgagcatggagtctacgcctcctccaaagaggacaagaacagagag
agagacagagaaaggagcagagataagggcagagaccgcaggagtgaaagagatgagcgt
gacagcagccatggccgtggcagcagtagcagccggtcggagcgttctgagcgcagtgac
aggagtgagcgctcacagagagatggatggtctgagcgcatcagtcggggaagcaagaga
gatgaacccctgacaccacagcatcggcccagagattctttcacaccctcacgctccaac
tgggaagaggatgacagtggttacgccagctcacggcattcccagtgggagtctccgtcc
cctgccccgtctcacagagagtcagatcgctcagagcggagtcatcgctccggccgcgag
agtgagaggagagacaggtcagtcagaggccgttatcccgacgacacacccctgcctacc
ccatcttacaagtacaatgagtgggccaatgacagaaagcatttgggttctacacctcgt
ttatcacaaggaaaaggtaggaaagaagaaggtgtgggaggcattgtgtttgataacgag
gatgagaaagaccagtgggaggaggaccagaagcaagctgacagagactggtacatgatg
gatgaaggttatgatgagttccacaaccctttcactaccacctctgaggagtatgtaaag
aagagagagcagatccttcagaagcagacacagaagagaatatcagcccagaagcgacag
atcaacgaggataatgagcgatgggagaccaaccgtatgctgaccagtggtgtggtgcag
aggttggaggtggatgaagactttgaggaggacaatgctgcaaaggttcacctgctggtt
cacaacctggttcctccctttctggatggaagaatagtcttcactaagcagccagagcct
gtcatccctgtgaaagatgctacctccgacatggccatcatcgctcgtaaaggcagccag
cttgtccgtaaacatcgtgagcagaaagaacgcaagaaggcacagcacaaacactgggag
ttggcaggcacaaaactgggagatatcatgggcatcaagaagacggaagaggaagacacc
tctgggggcaaaacagtaggcgaggatggcaaagtagactacagaacagagcagaaattt
gcagaccacatgaaagagaagagtgaggccagcagcgagtttgcaaagaagaagagcctt
ctggaacagaggcagtacctgcctatttttgctgtcagacagcaacttctcaacatcata
agggacaacagcattgtgattgttgttggggagacgggcagtgggaagaccacccagctg
actcagtacctgcatgaggatggctacactagctacggcatggtgggttgtactcagccc
cgaagagtggcagccatgagcgtggccaagagagtcagcgaggagattggcaccaacctc
ggagaggaggtgggctacgcaatccgttttgaggactgcacatccgagaaaacattgatc
aagtacatgacagatggtatcctgctcagggagtcactgagggagtcggacctggaccac
tacagtgctgttatcatggacgaggctcatgaacgctccctgaatactgatgtgctgttt
ggtctgctacgtgaggttgtatctcgacgtactgacttgaaactcatcgttacctctgcg
accatggactcagacaagtttgctgcattttttggcaacgtacccattttccacattcca
ggaagaacatttcccgtagacatcttgtttagcaagactcctcaggaggactacgtggag
gcagcagtgaagcaggccctgcagatccacctcagtgggatgataggagacatccttatc
tttatgcctgggcaggaggatattgaggtgacatcagatcagattgtggagcggttagag
gacctggagaacgctcctcctctggctgtgctgcccatctactcccagctgccctctgac
cttcaggccaagattttccagaaggctccagatggtgtgaggaaatgcatcgtggctaca
aacatcgctgagacctccctcactgtggatggaatcatgtttgtcgtggatgcaggatac
tgcaaacttaaggttttcaatcctcgcatcggaatggatgctctacaggtttatcccatc
agccaggctaatgccaaccagcgttctggcagagcaggacgtacaggaccaggacagtgt
tacaggctctacactcagagtgcctataagaatgagatgctgactaccaccataccagag
atccagaggaccaacctggccaatgtagtcctgctgttgaagtctctgggtgttcaggat
ttgctcctcttccacttcatggatccaccacctgaggacaacatgctcaactccatgtac
cagctctggatcttgggagctctggacaacacaggtgctttgacaccgacggggcgtctg
atggtggagtttcccctcgaccccgccctctccaagatgctcattgtgtcctgtgacatg
ggctgcagtgctgacatccttatcatcgtgtccatgctgtctgtgccggccatcttctac
agacctaagggtcgtgaggaggagagtgaccaggtcagggagaagttctcagtcccagag
agcgaccacctgacctacctcaacgtttacatgcagtggaagaacaacaattactccagc
atctggtgcaacgagcacttcatccacaccaaggccatgcgcaaggtgcgtgaggtgcgc
tcccaattaaaggacatcatggtgcaacagaggatgaacctgatttcctgcggttcagac
tgggacatcatcagaaagtgcatctgtgccgcatacttccaccaggctgcaaagctcaag
ggcattggtgaatatgtgaacgtgaggacaggcatgccatgccacctccatcctaccagc
tccctgtttggtatgggctacactcccgactacatcatctaccacgagctcgtcatgacc
accaaggagtacatgcagtgtgtgaccgcagtggatggagaatggctggcagaacttggg
cccatgttttatagcatcaaacatgcaggaagaagcagacaggagaaccgtcgtcgggcc
aaggaggagatcaccaacatggaggaggagatgtccatggccgaggagcagctgcgagcg
cgtcgagaggagcaggagaagaagaacagcactggtagtgttaagtctttgaaaatctgc
acaccaggaagaaaagaagaggcccccatgacgcccagacgcacccctgctcggtttgga
ctgtag
DBGET
integrated database retrieval system
