Epinephelus lanceolatus (giant grouper): 117261494
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Entry
117261494 CDS
T07331
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117261494 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ely03000
]
117261494 (kdm2ab)
04121 Ubiquitin system [BR:
ely04121
]
117261494 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ely03036
]
117261494 (kdm2ab)
Enzymes [BR:
ely01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117261494 (kdm2ab)
Transcription factors [BR:
ely03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117261494 (kdm2ab)
Ubiquitin system [BR:
ely04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
117261494 (kdm2ab)
Chromosome and associated proteins [BR:
ely03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117261494 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117261494 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_6
Cupin_1
LRR_4
LRR_8
Motif
Other DBs
NCBI-GeneID:
117261494
NCBI-ProteinID:
XP_033489797
LinkDB
All DBs
Position
10:29060770..29077258
Genome browser
AA seq
1309 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCTRFNSDLIKHMEGKDF
TFEYIQREGLRDPIIFDTTEGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPEFQKYSLGIG
LTPADLETHDHTKNGTSNGVDSDTENKEIKFKEEEVKEEEEEEAAQVTKPRQVLTPFELE
GLWNLLGKLEELPAQKKCVPAGIMNPTALLEDMRTLLKEHANDDSKLSYTGEPIVKWPKR
PSWYQPPIPPPPVIYRPRLGPTLHKPLGQRSAKRSSISALRRRRVRCKRCAGCCRKECGT
CQYCHDMRKFGGPGRMKKGCIMRQCLSPALPNTARCAICGEGESEESNLSSCSLMECSVC
SQIAHRQCIKEPGEGKINKDLPSCWECPKCYQGKDSASESSSDEDSDESEGSGSLPPSKL
AYREGIGVGEGGSRGKRRRSPSRPTAPPPSQKLLLQHQQSRKRANALELRLKKRIKLERS
KIITKQSSLERSPRLLGSRVLSRLRSSTSRLSQGRGRGSTWASGSPYHSSLGGAGSFQQQ
SSLGLVLEPKGEPRRGRGRGVRLRGGGAGRGIRGGRSPEGLEEEEEEESEDSSSSSTNTS
SSDDDEEEERGQNSGRGLDKENRPQSRREGRAAKEREEEGSEMTNQNGAEEDDEEEIEQD
SETGGKDGSYLKVTLQRPTRAKRDPSAIVPKLEAIASQTATSTIHNQSRTLARPPIRNRG
PRPDQHSNRHTPPHTRSGHTDTRTSHTERVEDSKKMRLSRPAKLSNGASSSSTSELPHLR
IPLSALQEGGSEADRENGGSGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRL
WARIDLSIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKDLMVAGCSW
SSISALCSSGCPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRTMQCLRLAGLDITD
STLRLVIRHMPHLTKLDLSHCNSLTDQSINLLTAVGSSTRNTLAELNLGGCSKLTDTCLK
YLRRLSCISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaaacgcctgcgtacaggtacgcggcgccgctac
caggacgatggaatctcagatgatgaaatcgaagggaaacgaatgttcgacctggatgag
aagttgcagtgcaccaggtttaacagtgacttgatcaaacacatggagggtaaagatttc
acatttgaatacatccagagggaagggctcagggaccccattatctttgatacaactgaa
ggccttggcatacaaatgccagaccctgattttagtgtgagtgatgtcaagttgtttgta
ggtagtcgacgcattgtagacgtgatggatgtgaacacccagaagggaatcgagatgtcg
atggctcagtggcgacgctactatgagacgccgccatcagaaagagaaaaactctacaat
gtcatcagcctggagttcagccacaccaggctggagaatcttgtcaaacgaccggcgtcg
gtggaccttattgactgggttgacaacatgtggcctcgccatctcaaggagaggcagaga
gactccactaatgccatcatagacatgcattatcccaaagtacagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttccgtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggcgacatcttcttgggggacaagtgt
cacgactgtcagaggatagagctcaagcaaggcaacaccttcataatcccatcagggtgg
atccatgccgtgtacaccccagaggacacgttggtgtttggggggaacttcctccacagc
tttaacatccccatgcagctcaatatctacagcattgaggatcgcacgcgggtgccagca
aagtttcgctacccgttctactatgagatgtgctggtacgtcctggagagatacctctac
tgtcagaccaacatctcccacctcacccctgagttccaaaaatactccctaggcatagga
ctgactccagctgaccttgaaacccatgaccacaccaagaatggcacctccaatggagtt
gacagtgacactgaaaacaaggagatcaagttcaaggaagaagaagtcaaagaagaagaa
gaagaggaggccgctcaagttactaaacctcgacaggtcctgactccctttgagttagag
ggactgtggaacctcttggggaaactagaggagctgccggcccagaaaaagtgtgtccct
gcaggcatcatgaaccccacagcactgctcgaagacatgaggactcttctgaaggaacat
gccaatgatgactctaagctgtcctacactggagagcctattgtcaagtggcccaaaagg
ccatcatggtaccagccgcccattccccctccccctgttatttaccgtcctcgcctgggc
cccaccctgcacaagcctctgggccagaggtccgccaaacgctcctccatctctgccctg
aggcgcagacgggtgaggtgcaagcgctgcgccggctgctgcaggaaggagtgcggcacc
tgccagtactgccatgacatgaggaagtttggtgggcctggacgcatgaagaagggctgc
atcatgaggcagtgtctatcgcctgccttgccgaacacagcgcgatgtgccatatgtgga
gaaggagaatctgaggagtcaaatctgagctcttgctcacttatggagtgctctgtctgc
tcgcagattgcccatcgtcagtgcattaaggaacctggtgaggggaagatcaataaggat
ttgcccagctgctgggagtgtcccaaatgttaccaaggcaaagactcggcatcagagtct
tccagcgatgaggatagtgatgagtcggagggctcaggctccttgccaccgtccaaactc
gcctaccgggaaggcatcggtgtaggtgaaggagggagccgagggaaacgtaggagatcc
ccgtcccgacccacagcaccaccaccttctcagaaactgctactgcagcatcagcagagc
cgcaaaagagcaaatgcactggagctcagactcaagaagaggataaaactagagcgcagc
aaaatcataacgaaacagtcatctctagagcgttcacccaggctgctgggctccagggtg
ctgtcccggctgcgctcctcaaccagcagactatctcagggcagaggccggggctccact
tgggcaagtggctccccttaccacagctctttaggaggggccgggtcctttcagcaacag
tcttccctcggtctagtacttgagcccaaaggagagccacgcagagggagggggagagga
gtgcggctgcgggggggaggagcaggaagaggaatcagaggtggtagaagccctgaaggt
ttggaggaggaggaggaggaggagagcgaggacagcagcagcagcagcaccaacaccagc
agcagtgatgatgacgaggaagaggagagggggcagaacagtgggaggggattggataaa
gagaaccggccacagtcgaggcgagaaggacgggcagccaaagaaagagaagaggaaggg
agcgagatgaccaaccaaaacggtgcggaggaggatgacgaggaggaaatagagcaggac
agtgaaacggggggcaaagatggttcatatcttaaagtgacacttcagcggccaaccagg
gccaagcgggacccatcagccattgtccctaaattagaagccattgcctctcaaactgcc
acttccacaatacacaaccagagccgaaccctcgccagaccccccattagaaaccgtggc
ccccgtcccgatcaacactccaataggcacacaccaccacacactcgcagcggacacaca
gacactcgtacttcccacacagagagggtggaggactcaaaaaaaatgaggctgagcagg
ccggccaaactgagcaatggtgcctcctcttcttcgacgtctgagcttccccatctccgc
atccctctgtccgccctgcaggagggagggagcgaagcagacagggagaacggtgggagt
gggccaggctgtgagagggaggtgtgggtatctgtcttccgttacttgagtcgagcagat
ctctgtgtctgcatggctgtctgcaagaactggtacaaatggtgtttagacaagcggctt
tgggcacggattgacctgagcatcaaacgcactgttactcctcaggcactaacaggcatc
ataaagagacagccggtcacgctcgatctctcctggaccaacatctctaaaaaacagctc
aactggcttgttggccgcctgcctgggcttaaggatctaatggtggcaggttgttcctgg
tcatctatttcagctctctgctcctctggttgccctctcctccgttctctggacctgcga
tatgcagacggggtcaaagactctcagatcagggatctagtcacccctccaggttgtgac
aatcgcagtcagttgcggaccatgcagtgtttgcgactagcaggcctggacatcaccgac
tccactctgcgcctggtgatccgccacatgccccatttaacaaaactggacctctcccac
tgcaatagcctcaccgaccagtccatcaacctgctgactgcagtgggctcgtccacacga
aacacactcgcagaactaaacctgggaggttgcagtaaactgacagacacgtgtctcaaa
tatctccgccgcctctcttgcatctcgctgctcgacctgcgaggctgtaaaggtgtctcc
cgcaaggcctgcgaggccttcatctccgagctgtcagtcaacacactctactgcctatca
gatgaaaaactgatccagaggatatcctaa
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integrated database retrieval system
