Epinephelus lanceolatus (giant grouper): 117270810
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Entry
117270810 CDS
T07331
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117270810 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ely03041
]
117270810 (ddx46)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117270810 (ddx46)
Spliceosome [BR:
ely03041
]
Complex A
U2 snRNP components
U2 related factors
117270810 (ddx46)
Complex B
117270810 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117270810
NCBI-ProteinID:
XP_033504608
LinkDB
All DBs
Position
2:complement(6811824..6831277)
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AA seq
1059 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRSRRERSRSRDRRRSRSRDRKRARR
SRSRERRRSRSRERRRSGSRNRARRSRSGSPGKSRRPDEKSRSKEKDNIDPLSDKKKIKE
EKEDDKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWS
LEDDDDDDEDVSAPMEGDDDDDGDGKGDRKDRDIKEEDKEEGEKEKETPMEQQAEEDDVD
PLDAYMEEVKQEVKKFNMGGMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELMENDQD
AMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEQYRKNFYVEVPELARMTPEEV
NAYRLELEGITVKGKGCPKPIKTWVQCGVSMKILSAMKKHSYEKPTPIQAQAIPAIMSGR
DLIGIAKTGSGKTIAYLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKKFSK
PLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVMDE
ADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSIVC
SDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLH
GGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVINYNCPNHYEDYVHRAGRT
GRAGNKGFAYTFITEDQARYAGDILKALELSGSPVPPELEQLWTSFKDQQKAEGKTIKSS
SGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEEGALDIEEQIESMFNSKKRVKDL
SAPGAAAGPTGTTTTTTTVPGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAEAQDV
MQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETIKRY
EEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIES
ANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcaagacactacagaaagcgctccgcgtcgcggggacggtcaggcagc
cgatcaaagagccgctctccggacaaacgctccaagaaagacgaccggagcaggagggag
cggtcacggagccgggaccgccgcaggtcccggtccagggacagaaaacgagccaggcgc
tccaggagcagagagaggaggaggtccagaagccgagaaaggaggaggtcgggcagcaga
aaccgagccagaaggtcccgatctggtagccctggcaagagcagaagaccagatgaaaag
tcaaggagcaaggagaaagacaacattgatcctttatctgacaagaaaaagattaaagag
gagaaagaggacgataaggttgaggatcaagactttgaccagaacaagcttgaggaggag
atgaggaagaggaaggagcgtgtggagaagtggagggaagagcagaggaagaaggcaatc
gaaaacatcggcgagatcaagaaagaactggaggagatgaagcagggcaaaaagtggagc
ttggaggatgatgatgacgatgacgaggatgtttccgcgccgatggagggagatgatgat
gacgatggggacggaaaaggggacagaaaagacagggacataaaggaagaggacaaagag
gagggtgagaaggagaaggagactcccatggagcagcaggccgaggaggacgatgtggat
cctctggacgcctacatggaggaggtgaaacaggaggtgaagaagttcaacatgggaggc
atgaaaggaaacgataagaaaggagcaatgacagtgaccaaagtggtgacagttgttaaa
accaagaaaggaccccacactcacaagaagaagggtgagctgatggagaatgaccaggat
gctatggaatactcatcagaggaggaggaggtggatctgcagacagctctgacgggcttc
cagacaaaacagaggaagatcctcgagcctgttgaccatgggaagattcagtatgagcag
tatcgtaaaaacttctacgtggaggtccctgagctcgcccgaatgactccagaagaggtg
aacgcgtacaggctggaattggagggcatcactgttaaagggaagggctgtcccaaaccc
atcaagacctgggtgcagtgcggagtgtctatgaagatcctcagcgcaatgaagaagcac
agctacgagaagcccacccccatccaggcccaggccatccctgccatcatgtcgggtcga
gaccttattggcatcgctaagaccggcagcgggaaaaccatagcctacctgctgcccatg
ttccgacacatcatggaccagaggcccctggaggagtctgagggaccaatctctgttatc
atgactccgacccgggagttggctctgcagatcaccaaggagtgtaagaagttctccaaa
ccactgggactcagggtggtgtgtgtttacggaggcacgggcatcagcgaacagattgct
gagctgaagagaggagctgagatcatcgtgtgcacaccgggaagaatgattgacatgttg
ggggccaacagcggtcgagtcaccaacctgcgcagagttacatatgtggtgatggatgaa
gcagacaggatgtttgacatgggcttcgagccacaggtgatgcgtattgtagacaacgtg
cgtccagaccgtcagacggtcatgttttcggccaccttccccagagccatggaggcgctg
gcccgtaggattctgtccaagcccattgaggtccaggtgggaggccgcagtatcgtctgc
tctgatgtggaacaacacgtgctggtgattgaggaggacaagaagttcctgaagctgctg
gagattctgggtcattaccaggagaagggctctgtcatcatctttgtggacaaacaggag
catgcagacggactgttaaaagacctgatgaaagcctcgtacccctgcatgtcgctgcac
ggaggaattgaccagtacgacagagacagcattatcaatgacttcaagaatggagcatgc
cgtctgatggtggccacctctgtggcagccagaggcctggacgtcaagcagctgatctta
gtgatcaactacaactgtcccaaccactatgaggactacgtccacagggccggacgcact
ggccgagcaggcaacaagggcttcgcctacaccttcatcacagaggatcaggctcgctat
gctggggatatcctcaaagccttggagctgtctggctctcctgtcccacctgaactggag
cagctttggacctccttcaaagaccaacagaaagcggagggcaagaccattaagagcagc
agcggcttctcaggaaaaggcttcaagtttgacgagacagaacacgccttggccaatgag
aggaagaagctgcagaaagctgctcttggactgcaggactctgacgatgaagaaggagcc
ctggacatcgaagagcaaatcgagagcatgttcaactccaagaagagggtgaaggacctg
tctgctcccggggcagctgccggtcccacaggaacaactacaaccacaacaactgtcccc
ggagggctgccaggcctcggacccacatctgctggaaacatccagaaactggagatggcc
aagaggctggcgctcaagatcaatgctcagaagaacctgggcgccgaggcacaagatgtg
atgcagcaggccaccaacgccatcctgcgcggcggcaccattatgacaccctcggtgtca
gccaagaccatcgcggagcagctggcggagaagatcaatgccaagctgaactacacccct
gtggagaagctggaggaggagcggcaggcggctgaacaggccgagaccatcaagagatac
gaagaggagctggagatcaacgacttccctcagacggccaggtggaaggtgacctctaaa
gaagctctgcagaggatcggtgaatactctgaagctgccatcaccatcagaggaacctat
ttccctccaggcaaagagcccaaggaaggagagcgcaagatctacctggctattgaaagt
gcaaatgaacttgctgtgcagaaagccaaaacagagattacgcggttaattaaagaagag
ctcatcagattacaaaattcctaccagccgacgagcaaaggccggtacaaagtgttgtag
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