Epinephelus lanceolatus (giant grouper): 117270979
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Entry
117270979 CDS
T07331
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117270979 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117270979 (pcf11)
03019 Messenger RNA biogenesis [BR:
ely03019
]
117270979 (pcf11)
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117270979 (pcf11)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117270979 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
117270979
NCBI-ProteinID:
XP_033504924
LinkDB
All DBs
Position
2:2355587..2376573
Genome browser
AA seq
1640 aa
AA seq
DB search
MDCLLISGYGIDQARVGFPGSLGSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYLLDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEPSSPVPAPAQPQPPPPPAASASQPVPAISQSSLTQEQLIRQQLLAKQKQLLEL
QQKKIELELEQTKAQLAGGFVMPTATSVSTPATQSAALSTAPKTTSQTVPVVRPWLPPQT
QTDAKSTTRDPRLNRTGPPAASQAKEQPAGKKDGLATPEKSTRPEKARTPRKDVLEDKAK
SKSPSPLAKSVQSKNKQAEAEILKSADGTKKDPRLKKRTQDKSGDARDEELKEKKRCTEK
KEREGAARGVDPQRSNKGKLVNGSVTKHDREEPAEKLEFKTGGNARTHARKRTRSRSRSR
SPATSPKRKDRRSPKSRARSNSLSPSPSHKAGKPRRVRAEEPEHGKPGREARLAPKKNQS
ENRRSKRPAEDRHSEARDSHSPRSHDGGGKEAKEAPHRWRSGWEENKHPKLPEEPHLKPS
GPPRHKQYGGPPRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEITEE
DFLNMAHKIKHFFQYQEERQRSDSWEESADFPAKKVPLLTTPGAPSQPRPHEGMDPAELS
YYEHKSKLRKTQVTHRNTGEEWDGEESPEESEETGQGEKTGRSAGHPPSHKYNRAPRDRP
GERRSKEREEPRPPLGPMIEEYHHGKEFPTLKSLPGLRFRRRADPRESKRSEVRFWSCGV
SGSRSGTLQQGEREWNSPLTERQRLDEREEQKSGYDAPRRYGQPVESRLPDPRRPEVPPP
SGTVVHRNCPSPAGLDPPAPRFERERLSPLHQKDSAEMSPVPRFESPNSEHSDDGPLNLD
APPLPPPPKSILKAPVRGGPLSSVRQHSDSPGHTPPHDGGHPSSRYDGPGHMGPSRPHPP
GWYESGGPGRYDESSRFDGPHHQGPGRFDGGGPPHHNMPERFDGPHMSHGPMRGGDSMGR
FDGPPHPQGPGRFDGPIGQQPPVRFDGPGPGPGHFEGPIQRFDGPLRFDNNMAPGPGSGP
MNFQQTRPIRFDGPPNQMGPMRFDGPGPLRFEGPVQPGPRFDLPNVPHQGGPPRYECAPS
QQGPLRFPPQHNLQPPMGPMAPPMYEPIAPPQNFNMAPQRFPEPMNPQFPAGPMAFPAQP
NLQPGGSFNMQAAPPFSQPGPVPFYNPAAPAVSMQQPVNMLANPNQPFLPQNPVPFGQQT
PQVAPPENHFGQVDVNDLLSKLISTGIIKPSQPDAAPTTTTESSSTPSAAPPVVEEEEEE
ADEVEEEDDIPDLTSFTVDDMKQRYESVVTKLYSGNQCCLCSMRFTTAQTDMYADHLDWH
FRQNHAGKVASKKITHRRWYYTLTDWIEFEEIADLEERAKSQFFEKENEEEVQKSQAAAK
EKEFQSVKATKDQVGESCEICQEPFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKNS
SYLDVTPSPNKLLTDHPLSAYIKSEEEEGTSCEVAAAAAAAAASVSVKQEVKSEASELPD
VKKEEEEVLRDEVQCEESKQ
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtatcgatcaggctcgtgtaggtttccccggg
tcgctcggctcaaagatggacgacaaagcggcgagggaagacgcgtgccgggagtatcag
tcgtctctggaggacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacctcaacttcgccaaggatatcgtggcaataattgaagcgcaaatcagc
aaggccccatctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagagtctgttcaagctgcgctcgacgtgggac
gatgtgtttcctctcaagaaactctacctgctggacgtgcgggtcaactctgtggacccg
gcctggcccatcaagccgctgccgcccacagtcaacgccagcattcatgtcaaccccaag
tttttaaagcagtctgaggagccatcctctccggtgcccgcccccgctcagccgcagccg
ccgccaccgccggcagcatcggcttcccagccagttcccgccattagccagtcgagcctg
acccaggagcagctgatccgacagcagctgctggccaaacagaagcagctcctggagctt
cagcagaagaagatcgagctggagctggaacagacaaaagcgcagctggccggtggattt
gtgatgccaacagcgacttcagtctcaactccagcaacgcagagcgcggcactgagcacg
gcaccgaagaccaccagccaaactgtccccgtggtccgaccgtggctacctcctcagact
cagacagacgccaagtcgaccaccagagacccccgactgaaccgcaccggcccccctgct
gcctcccaggccaaagaacagcctgctggcaagaaggatggcctcgccacacctgagaaa
tccacccggccagagaaggccaggaccccgaggaaagacgtgttagaggacaaggccaag
tccaagtctccatctccgctggccaaaagtgtccagagtaaaaacaaacaggcggaggcc
gagattctgaagtcagctgacggcacgaagaaagacccccgactgaagaaacgcacacag
gacaagagtggagacgccagagacgaggagctgaaggagaagaaaagatgcacagagaag
aaggagcgagagggcgccgcccggggggtcgaccctcaacggtccaacaaggggaagctg
gtgaacggctcagtgaccaaacacgatcgcgaagagcccgcggagaagctcgagttcaag
accggaggcaacgcccggacgcacgccaggaaacgcacccgctcccgctccaggtctcgc
tcccccgccacctccccaaagaggaaggacaggcggtccccaaagagcagagcccggagc
aactccctgtccccgtctccctcccacaaagccggcaaacccaggagggtccgcgcagaa
gaaccggagcacggcaagcccggcagagaggcccgcctcgcacccaagaagaaccaatca
gagaacaggaggtcaaagaggccggctgaggatcggcactctgaggccagagactctcac
tccccacggagccacgacggaggaggcaaggaggccaaggaggctcctcaccgctggagg
agcggctgggaggagaacaaacatccgaagctgccggaggaacctcacctgaagccctca
ggacctcccagacacaaacagtacggcggcccgcctcgccccaccaccccccgaaccccg
aagcatcgcctcagcgtagacgccaatctgcagatacctgaagtcctcaactccgcctcc
aagaaggacctgctgaggagggccagtaagcgtctggagagcggcgagatcaccgaggag
gacttcctgaacatggcccacaagatcaaacacttctttcagtatcaggaggagaggcag
cgctccgacagctgggaagagtccgcagacttccctgccaagaaagtgccgctgctgact
accccgggtgccccctcccagccacggccccatgaaggcatggacccggcggagctgtcg
tactacgaacacaagtccaagctcaggaagacgcaggtcacccaccgaaacactggggag
gagtgggacggcgaggagagtccggaggagagcgaggagactgggcagggtgagaagacg
ggccgcagcgccggacacccgccatcacataaatacaaccgggcgccacgggacagacca
ggtgagaggaggagtaaagagcgtgaggagccccgcccaccactcggccccatgatcgag
gagtaccaccacggcaaagagttccccaccctgaagtctctgccgggccttcgcttcagg
aggagagccgaccccagagagtccaagaggtcagaggtcaggttctggagctgcggggtg
tcagggtctcgatcagggacacttcagcagggtgagagggagtggaactctccgctgaca
gagcgccaacgcctcgacgaacgtgaggagcagaagagcggctacgatgctccgcggagg
tacggccaacctgtcgaatccaggctccctgatccacggaggccagaggtgcccccgccc
tccggcaccgtggtgcacaggaactgtccgagtccagctggtctggacccgccggcgccc
aggtttgagcgcgagcgcctgtctcctctccaccagaaagactctgcagagatgagccca
gtcccgcgcttcgagagccccaacagtgaacactccgacgatgggccactcaatctggat
gcccccccgcttccccctccacccaagtccatcctcaaggcgcctgtccgtggaggaccg
ctgtcttctgtccgacagcacagtgactccccaggacacacacctcctcatgatggagga
cacccctcctcccggtacgacggacccggacacatgggcccctccagaccgcaccctcca
gggtggtacgagagcggtggacccgggcgctacgatgagtcgtcccgattcgacgggcct
caccaccagggtcctggcaggtttgatggcgggggaccgcctcatcacaatatgccagag
aggtttgacggaccccacatgtctcacggtccaatgaggggcggagacagcatggggcgg
tttgacggtccacctcaccctcagggccccgggagatttgatggtcccattggtcagcag
cccccggtgaggttcgacggtccagggcccggaccgggtcactttgagggtcctattcag
cgctttgacggcccgctgcgctttgacaacaacatggctcctggtcctggatctggacca
atgaacttccagcagacgcgacccatccgctttgacggccctccaaaccagatgggcccg
atgaggttcgatggccctggtccgctgcgcttcgaggggcccgttcagccaggtcccagg
tttgacttacccaacgtgccccatcagggtgggccaccacggtacgagtgtgctcccagc
cagcagggccccctgaggtttcctcctcaacacaacctgcagccccccatggggccgatg
gccccacccatgtacgaacctattgcccccccgcagaacttcaacatggccccccagcgc
ttccctgagcccatgaaccctcagttcccggcggggccaatggcgttcccagctcagccc
aacctgcagccaggaggaagcttcaacatgcaggcggcgccgcccttcagccagccgggc
cccgtccccttctacaaccccgctgcccccgccgtcagcatgcagcagccggtaaacatg
ttggcgaaccccaaccagcccttcctgcctcagaacccagtgcctttcggacagcagact
ccgcaggtcgcccctccagagaaccacttcggtcaggttgacgtcaacgacctgctgtcc
aaactcatttccaccggcatcatcaaaccctcgcagcccgacgccgcaccgaccaccacc
acggaatcatcttccacgccctcagcagctccgcctgtggtggaggaggaggaagaggag
gcggatgaggtggaggaggaagacgacatcccggacctgaccagcttcactgtcgatgac
atgaaacagcgttacgagagcgtggtgaccaagctgtactcagggaaccagtgctgcttg
tgcagcatgaggttcaccaccgctcagaccgacatgtacgccgaccacctggactggcac
ttcagacagaaccacgccggcaaggtcgccagcaagaagatcacacaccgccgctggtac
tacacgctcacggactggatagagttcgaggagatcgccgacctggaggagcgagccaag
agtcagttctttgagaaggagaacgaggaggaggtgcagaagagccaggcggccgccaag
gagaaggagttccagagcgtgaaggccaccaaggaccaagtgggagagtcgtgtgaaatc
tgtcaggagccctttgagacgtactgggtggaggaggaggaggactggttcctgaagaac
gccgtcagggtcgatgacaagaacttccaccccgcctgttttgaagattataaaaattcg
tcgtacctcgacgtcacgccgtcgcccaacaagctgctcactgatcatccgctgagcgct
tacataaagagtgaagaagaggagggcacttcctgtgaagttgctgctgctgctgccgcc
gccgcagcctcagtctcagtcaaacaggaagtgaagtctgaggcgagcgagcttcccgat
gtgaaaaaagaggaggaggaggttttaagagacgaagtgcaatgtgaggagagcaaacag
tga
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integrated database retrieval system
