Epinephelus lanceolatus (giant grouper): 117271638
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Entry
117271638 CDS
T07331
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03030
DNA replication
ely03410
Base excision repair
ely03420
Nucleotide excision repair
ely03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117271638 (lig1)
03410 Base excision repair
117271638 (lig1)
03420 Nucleotide excision repair
117271638 (lig1)
03430 Mismatch repair
117271638 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ely03032
]
117271638 (lig1)
03400 DNA repair and recombination proteins [BR:
ely03400
]
117271638 (lig1)
Enzymes [BR:
ely01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117271638 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117271638 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117271638 (lig1)
DNA replication proteins [BR:
ely03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117271638 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117271638 (lig1)
DNA repair and recombination proteins [BR:
ely03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117271638 (lig1)
NER (nucleotide excision repair)
Other NER factors
117271638 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117271638 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
117271638
NCBI-ProteinID:
XP_033505841
LinkDB
All DBs
Position
19:complement(25547180..25604331)
Genome browser
AA seq
1019 aa
AA seq
DB search
MQRSIASFFQPKCKDKDVQKKSADEPLKKPVKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDDEEAPVVKEQTVTKGQGDKEAHGKIEKKDDVFKAVPTPMSPPPAPATPVTPATPATPA
SSASPGTPGTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKDESEAKEEQGQQNKR
PRVESGASSTGNTVEPMEEGAKEERVEKAVTEADSPDEEVEEKKKKGEEEMAEEEEEEQV
KKKSPDEKEKKAEGAEKKNEAKEKTDDEKGPAVARKKEAVVEKDTREGDESPKSQMARKQ
KEAKEQKDKEPPKKAPISSFFAPRKAAVKTDKPEKNEGEKKTSAERKTSTEESRDTKGES
TSGQTTTDYDPSRPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLR
SVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKG
DLGLVAESSRSNQRTMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFS
EARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSTESRRAWIE
EKSLILKQTYCEMPNYDVLMPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKK
FDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISRFPKVKKDSVVSCV
LDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCR
RRALLRESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAK
RSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIG
TGFKDEDLEQHYKFLKEHILPKPRAYYRHDQSAEPDVWLDAVQVWEVKCADLSLSPVYKA
AMGMVDPEKGISLRFPRFLRIRDDRKPEDATTGAQIADLYKKQQQIQNQGEKADPEEYY
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttttttcagcccaagtgcaaggacaaggatgttcagaag
aaatcagcagatgaaccactgaaaaagcctgtcaaaagccccctcaaggtgcagaacggt
gtccaggaggctgattcacccatcaagaaggttgccaaacgcagccgtcagatcctggac
agtgacgatgaggaggctccggtcgttaaagagcaaactgttaccaagggacaaggagac
aaagaagcgcatggtaaaatagaaaagaaggatgatgtcttcaaggcagttccaacccct
atgtctcctccaccggccccagccacccctgtgacccccgccactccagccactccggcc
tcttcagcttcacctggtacccccggcacaccaaactccatctccccctctgggattgtt
aagcgcaagactgcgaggaagatgttccctaagaggaagcttgatgagagcaggagcggc
agcgagagtcagaaagacgagtccgaggccaaggaggagcagggtcagcaaaacaaacga
ccccgtgtggagagcggcgcaagcagcacagggaacaccgttgaacccatggaggaggga
gcaaaggaagaaagggttgaaaaggcagtgaccgaggctgacagccctgatgaggaggtg
gaggagaagaagaagaaaggggaagaagagatggcagaggaggaggaggaggagcaggtg
aagaaaaagagccctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaa
gcaaaggagaagacggatgatgagaaagggcccgctgttgccaggaaaaaggaggcggtg
gttgaaaaggacacacgagagggagacgagagcccaaaaagtcaaatggcgagaaagcag
aaagaagcaaaagagcagaaagataaggagccgcccaagaaagcccccatcagcagtttc
tttgctcccagaaaagctgcagtgaagacggacaaaccagagaagaatgagggggagaaa
aagacgagtgcagagaggaagacttcaacagaagagagcagagacacaaaaggtgagtca
acctcgggacaaacaacgacagactacgatccgtccaggccgaactatcatcctgtggac
catgcctgctggaagcaaggccaaaaagtgccgtacttggcggtggctcgcacctttgag
aagattgaagaggactctggcaggctgagaaacattgagacgctgtcgaacctgctccgc
tccgtgctgctgctctctccagacgacctgttgtgctgtgtgtacctgtgtttgaaccag
ctgggtcctgcctacctggggatggagctcggtgttggagaaacggtgctgatgaaagct
gttgctcaagcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaagga
gatttgggcctcgtggccgagagttcccgtagcaaccagcgcacaatgttccagccggcc
agtctgacagcagggggcgtgttcaggaaattgaaggaaatcgccagcatgagtgggaac
tcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttcc
gaggcccgctacatagtcaggtccctggctggtaagctgaggatcggcctggctgagcag
agtgtcctatcagcgctaagccaggctgtgtgtctgaccccccctggacaaggtttccct
cccgctgtgatcgacgcagggaaggggatgagtactgagagcaggcgggcgtggatcgaa
gagaagagtctcattctcaaacagacttactgcgagatgcccaattatgacgtccttatg
cccgttctgctgaaagaaggcatagacgagctgcccaatcactgcaagctcactccaggt
gtaccgctgagacccatgttggctcaccccaccaagggtgtcggcgaggtgatgaagaaa
tttgacgaggcggcgttcacctgcgagtacaaatacgacggagagcgtgcacagattcac
attctcgagaatggcgaggttcgaatattcagccgcaaccaggaagacaacaccagcaaa
taccccgatatcatctctcgctttcccaaggtgaagaaggattctgtggtatcctgcgtc
ctggactctgaggctgtggcctgggatcgtgagaagaaacagatccagcccttccaggtc
ctcaccacccgtaagagaaaggacgtggatgcttcggagatcaaagtccaagtgtgcgtg
tatgcctttgacctcctctatctcaatggagagtccctggtgcgacagccgttgtgtcgg
cgtcgggctctgctgagagaaagcttctcagaggtggagggggagtttgtgttcgcccga
tccatcgactccgacaacaccgacgccatcgccgagttcctggagcagtctgtccgagac
tcctgcgagggcctcatggtgaagactctggagaaggatgccacctatgaaattgccaag
cgctctcacaactggctcaagctaaagaaggactacctggatggggtgggtgacacagtg
gacctgtgcgtgattggtgcctacctgggaaaaggcaagaggacaggcacctatgggggc
ttcctgctggcctgctacgatgacgagaacgaggagttccagtccgtctgcaagatcggg
acaggcttcaaagatgaagatctggagcagcattacaagttcttaaaggagcatattctg
cccaagccccgtgcttactaccgccacgaccaatcagcagaacccgacgtatggctggac
gccgtgcaagtctgggaggtgaagtgcgctgacctgtcactgtcgcccgtctacaaggct
gctatgggaatggtggatccagaaaaaggcatttctctgaggttcccccgcttccttcgg
atcagagacgacaggaagcctgaggatgccacgactggagctcagattgcggatttgtac
aagaagcagcagcagattcagaatcagggggagaaagctgacccggaggagtattactga
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