Epinephelus lanceolatus (giant grouper): 117272239
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Entry
117272239 CDS
T07331
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03013
Nucleocytoplasmic transport
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117272239 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
117272239 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117272239 (thoc1)
03041 Spliceosome [BR:
ely03041
]
117272239 (thoc1)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117272239 (thoc1)
Spliceosome [BR:
ely03041
]
Complex C
Other components
EJC/TREX
117272239 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117272239 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
117272239
NCBI-ProteinID:
XP_033506940
LinkDB
All DBs
Position
19:complement(4480711..4490225)
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AA seq
654 aa
AA seq
DB search
MSPSLFNFVEAKDKFTASARHALLGKNVKPLINTFNQFPGNETEKKTTLDQALRGVLGDQ
IVEQKASCDEYLSLIYLSIDAVTEGICSATTPFLLLGDVLDCLPLDQCDRIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNVTVFNKNEQESTLGQKHTEEKEEGMEVEEGEMGEDDAPALCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEELRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQTTWIEETTKLV
YQLLREIPPDGDKFANMVEHILSTEENWNGWKNEGCPSFVKERTVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNSDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKMVTNQQMDDIAAKLGAQWKTLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFSQIADSLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtccttatttaattttgtcgaagctaaagacaaatttacggcgtctgccaga
catgctctgcttgggaaaaacgtcaaacctttgattaacactttcaaccagttccctggg
aatgagacagaaaagaaaaccacactcgaccaggctctgaggggtgtccttggtgatcag
attgttgagcagaaggccagctgtgatgaatacttgtctctcatctatctgagtattgat
gcggtcacagaaggtatctgctctgctacaactcctttcctgctgctgggagatgtactg
gactgtcttcctctcgaccaatgtgacagaatattctcctttgtggaggagaatgtttcc
acctggaaatcgaactctttttacactgccgggaagaactacttgttgaggatgtgtaat
gatcttctaaggaggctgtccaaatcccagaatactgttttctgtggtcggatccagctt
ttcctggcacgtctcttccctctgtctgaaaaatcaggtctcaatctgcagagccagttt
aatctggacaacgtaacagtgttcaacaaaaatgaacaagagagcactctcggccagaag
cacacagaagaaaaggaagaaggcatggaggttgaggaaggagaaatgggagaggatgat
gctcctgcactgtgctccattccaattgactacaacttgtacagaaagttttggacgctg
caggactacttcagaaaccctgtgcagtgttacgataaattctcctggatgacatttctc
aagttctcagatgagacgttggcagtgttcaagagctacaagttggatgacatgcaggcc
tctaagagaaagctggaggagctgagagcatctggaggagaacacgtctactttgccaag
tttctcacaagtgagaagctgatggacctgcagctcagcgacagcaacttcaggcggcac
attctgctgcagtacctcatcctcttccagtacctgaagggtcaggtcaagttcaaaagc
tccagctgtgtcctgaatgatgaccagaccacgtggattgaagagacaactaaactggtt
tatcagctgctgagagagatccctcctgatggagacaagtttgccaacatggttgagcat
atcctcagcacagaggagaactggaatggctggaaaaacgagggatgcccgagctttgtg
aaagaaaggacagtagatgacaaacccaagagacccaccaggaagagacaagctccagaa
gacttccttggaaaagggccagaccgcaagatattcatgggaaatgatgagttgacccgg
ctgtggaacctgaactctgacaacatggaggcctgcaagtcagacagcagggagttcatg
ccatcactggacgaattctttgcggaggccattgaacaggctgaccctgctaacatggtg
gaggaagaatacaaggttgtgcggaacccaaactacggctggcgcgcgctgaggctgctg
tccaggagaagtcctcacttctttcaaccaaccaaccagaagttcaagagtctggcagac
tacctggacagcatggtcagcaaactggccaaagaactgccgaaggatattccctctgaa
gagatcaagacaggagaggaggacgatgacgataacggagacaatctgctcaaagacagt
aatgacagtccgagcatacaaagcaagatggtgacaaaccagcagatggatgacattgca
gccaaactgggagcgcagtggaagacattagcgtcccacttggagatgaaggcagcggag
ttgcgcgagatcgaaacagacagcgaagacgtcgacatgcaggccaaactgctgctcgta
gcctggcaggacagagagggcacacaagctactgtggagagcctggtcacggcgcttaac
gctgcaggattctcccagattgcagacagcctcagtgaggcttaa
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integrated database retrieval system
