Elizabethkingia sp. 2-6: FCS00_11970
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Entry
FCS00_11970 CDS
T06039
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FCS00_11970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elz03400
]
FCS00_11970 (mfd)
Enzymes [BR:
elz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCS00_11970 (mfd)
DNA repair and recombination proteins [BR:
elz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FCS00_11970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
QCO47063
UniProt:
A0A4P8E7S2
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All DBs
Position
2572721..2576077
Genome browser
AA seq
1118 aa
AA seq
DB search
MQLTSIKNTLLPDLLKKQWGKEIFDTLREKQKISIKGAAGSSLSLLAAEYFVSFHQPVLV
ILDDKEDALYTTAELEELCGKEHVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKT
PKVIVAYAAALSEKVIKKEEFGKFSHTIKVGEQLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEFPFRISFFGNEVDSIRTFDIESQLTQEKVEEFQLVSAIQDISGDT
SKTSLLGILPKETVMFTRNAFLGVKHIREFYEKAQEVYKTLHQDIKYSEPKAIFVSEEEF
LNEINHFVWADFTSEVLKSSRAEIQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKDRLESIFEELEKNIPFKSFASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPDGRDIVLSKLGSSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAY
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTVMDRLICGDVGFGKTEVAIRAAF
KAAVDGKQVALLVPTTILAFQHYRSFKERLKDFPVEVSYLNRFRTAKQKKETLEGLVSGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTKLVGFNEEILRDAISYELQRDGQVYFINNRIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSSDSRKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKK
LFNSVKDVNIDTDLELMLPDDYVNSTEERLLLYQKLADVRNAAELSRFEYELNDRFGALP
KEAINLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSDRFKKIIQYLGSNP
QHAQLKEKHSPEGNQLMMRKDKITNVDEVNTLLNSILA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattaacttctataaaaaatacgctgttgcccgatttgttaaagaaacaatggggt
aaagaaatattcgatacactgcgtgaaaagcaaaagattagtataaaaggtgctgcaggc
tcttctttgagcttacttgctgcagaatactttgtgtcgtttcatcaacctgtgctggta
attctggatgataaagaagatgctttatacactacagcagaactggaagagctttgtggg
aaagagcatgtattgtattttccggcaacttttctggaaccttatcagatagaaaaaact
cagaatgccaatagagtattgaggacagaggttattaatcagttgaattcgtctaaaaca
cccaaagtaattgtagcttatgcggcagcactttcggaaaaggtaattaagaaagaagag
tttggaaagttttcacataccataaaagtcggagaacagctggattttgattttatagat
gaattactaaaccattataagttcaacaggacagattttgtatcagagcctggtgaattt
tctgttcgtggtggtattatagatgtgttttcttatgcatatgagttcccttttcgtata
agtttctttggaaacgaagtagatagtattcgtactttcgacatagaaagtcagctaaca
caggaaaaagtggaagaattccagctggtgtccgctattcaggatatttcaggtgatact
tccaaaacatctttattgggaattttgcctaaagaaaccgtaatgtttacccgaaatgca
tttttgggagtaaagcacattcgcgagttttatgaaaaagcacaggaagtatataaaacc
ctgcatcaggatattaaatacagtgaacctaaagctatttttgtatcagaagaagagttt
ctgaatgaaataaatcattttgtatgggcagactttacttcagaagtattaaagtcttca
cgagctgaaattcagctgaaactcacccaacagccagtttttaataaaaactttgaatgg
ctgattcaggatctggaagataaattggaaaaaggctatgatgcatggatttcattctca
tccgaaaaacaaaaggaccgtctggaaagcatttttgaagagcttgaaaagaatataccg
tttaaaagttttgcttccgagctgcacgaaggttttgtagataatgaaaataaaatatcg
gtttataccgatcaccagatattcgacagataccaacgatataaagcgaaaaacgctttt
gccaaaagtgagcaacttaccttaaaagatctgatgtctctgaaagttggagattatatt
acccatattgatcatggtattgggaaatttatgggactggtaaaggttaataataacggt
aaagttcaggagtgttttaaattgtcttataaaaatggtgacttgttgtatgtaagtatc
catgcgcttcataaaatatcaaaatataacggaccagacggaagagacattgtattgagt
aagttagggtcttccgcatggaagtccctgaagcagaaaaccaaagcgagggttaaacaa
attgcatttgatctgattaagctttatgctcaaaggaagagtgcaaaaggttttgcttat
tcaccagacgggtatatgcagaatgagttggaagcatcctttatttatgaagatactccg
gatcaggagaaagctacaatggatgtgaaagctgatatgcaggcggatacagtgatggat
cgtttgatttgtggagatgtaggatttggaaaaacggaggttgctatccgtgcagctttc
aaagcagctgtagacggaaaacaggtagcacttttggttcctacaacgattctggcattt
cagcattacagaagttttaaagaaaggcttaaagacttccctgttgaggtttcttatctt
aaccgcttcagaactgcaaaacaaaagaaagaaacactggaaggattggtttctggtaaa
atagatattgtaattggtacacatcaattggtaggtgccagcgtaaagtttaaagacctg
gggttactgattattgatgaggagcataaattcggcgtagcaataaaagataagctgaaa
acaatgaaaaccaatattgatacactaacgcttacggcaacacctattccgagaacatta
cagttttctttaatggctgcaagggatctttcagttattaaaacaccgccgcctaaccgt
cagcctgtagataccaaattggtaggctttaacgaagaaattctaagagatgctattagt
tacgaattacaaagagacgggcaggtttatttcattaacaacagaatagaaaaccttaaa
gaaattgcaggtcttatccagagattagttcctgatgctcgagttattactgggcacggg
cagatggatggtaagcaactggaggcaaatatgatggattttatggaaggtaaatacgat
gtactggtttctacaacgattgtggagagtggacttgatgtacctaatgccaatacaatt
ttcattaatgatgctcagcgtttcggtatggcagatttgcaccagatgcgtggacgcgta
ggacgtagtaacagaaaagcattttgttaccttattacaccaccaatggatttggtttct
tcggattcccgtaaacgtctggaagctattgaacagttttcggatttgggtagtggtttc
catattgcgatgaaagacttggaaatccgtggagccggagatttgttaggaggagaccag
agtggctttatcaatgaaatgggcttcgatacctatcagaaaattatgcaggaagctctg
gaggaactgaaggatgaagatatggaaggccttttccaaaatgaagaagaacgcaaaaag
cttttcaactctgttaaagatgtgaatattgataccgatttagagctgatgcttccggat
gattatgtaaatagtacggaagagcgattgttgttatatcaaaaactggcggatgtaagg
aacgctgcagagcttagtcgtttcgaatatgagttgaatgaccgtttcggagcattgcca
aaagaggcgattaacctactgaagagtatcgaactgaaatggctagcagcggatataggt
tttgataagatagtgatgaagaacggaattttccttgggtactttccgggtaatccacaa
gataagttttatcaaagcgacagatttaaaaagattattcaatatcttggatccaatcct
caacatgcccagcttaaagaaaaacattcaccagaaggcaatcagttaatgatgcgtaaa
gataaaataacaaatgtggatgaggttaatacattgctaaatagtatattggcataa
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