KEGG   Euzebyella marina: D1013_09435
Entry
D1013_09435       CDS       T05677                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
emar  Euzebyella marina
Pathway
emar03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:emar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D1013_09435 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:emar03400]
    D1013_09435 (ligD)
Enzymes [BR:emar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D1013_09435 (ligD)
DNA repair and recombination proteins [BR:emar03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D1013_09435 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: AYN67571
UniProt: A0A3G2L5X8
LinkDB
Position
2233702..2236137
AA seq 811 aa
MSLDEYNSKREFSTTSEPIGKISPIGGNNRFVIQRHSSRKLHYDLRLEIDGVLKSWAIPK
GPSLNPADKRLAVRTEDHPVSYLNFEGTIPKGNYGAGEMEIWDFGIYTVDGMNNVSEISI
SLKQGNLKLFFNGQNIKGNYSLVRTGWKSGKEQWLMIKKKDEFAVNGLYDAESFTDGTEN
FTYPKNLRPGLILSPMLATVRDKVFNDPNWIYELKWDGYRLIAHISDKGVLLQSRNGVSY
NSKFPILVDELKSLDNDVILDGEVVILNEQGISQFGELHNYPDSGGILRYYVFDMIYLNG
HSMLNLPLLDRKSLIPNVLEDLSITRFCDHIEGMGTTLLEMAKKSGMEGIIAKEIYSHYA
IGTRSENWLKIKLSNSIDAIICGYVVADQGETFSSIILGKKEANGNLIYIGNCGVGFGSD
LKYDLKRIMSSFETLNSPFKSSIKLKGKKVIWLRPKLVCEVNFREKTKNNLLRQPVFKRV
VNWEEPVIDSIDHDNSLINRDEPIPRGGSIKEYVDVDGFKVPISNLDKILWKESKKSKYH
LIDYYLSISDYIIPYLKDRPQSLHRFPEGIENEGFYQKDVDFLPEWAGSLNIYSKSSDRE
INYLLCQNAATLLYMANLGCIEINPWNSRKYSLEKPDYAIIDLDPPVTKSFSDIIIVTKV
LAELLNELQLKSYYKLSGSKGIHVYIPMGAEYSYEEVRDFIKLICIVVEKRLPELTTLQR
TIKKRNGKIYLDYLQNRRGQTVASTYSIRPLPKAPISTPFLLEELGHIDSAQYFTLNDIQ
QRILDVGDVFSPMLFEKSNLEDSLEELEKLL
NT seq 2436 nt   +upstreamnt  +downstreamnt
gtgagcttagacgaatataatagtaaacgagaattttcaacaacttcggaacccattggt
aaaatttccccaattggcggtaataatcgatttgttatacaaagacattcttctagaaaa
ttacactatgatttaaggttagaaatagacggtgttctgaagagttgggccattccgaaa
ggtccttctttgaatcctgctgataaacgattagcggtgcggacggaagaccatccggtc
tcgtatctgaattttgagggtactattcccaaagggaattacggtgctggagaaatggag
atttgggattttggaatctacacggtagatggaatgaacaacgtctctgaaatttcaatt
tcccttaaacaaggaaatttaaaattgttctttaatgggcaaaatattaagggaaattat
tcattggttcgaactggatggaaatctggaaaagaacaatggcttatgattaaaaaaaag
gatgaatttgccgttaatggtttatatgatgccgagtcctttacagatggtacggaaaac
tttacttatcccaagaatctaaggccaggattaattctttctcccatgctagcaactgtt
agagataaggtttttaatgaccccaactggatttatgaattaaaatgggatggttataga
ttaatagcccatatttccgataagggtgttttgttgcagtcgagaaatggcgttagttat
aatagcaaatttccgattctggttgatgagcttaaatctctggataacgatgtaattttg
gatggggaggttgttatactaaatgaacaagggatttctcaattcggagaattgcataac
taccctgattccggcggtatcttgagatattatgtatttgatatgatctatttaaatggt
catagtatgctcaatctgcctttattggatcgaaaaagtttaattccaaatgtattagaa
gacttatccattaccagattttgcgaccatattgaaggtatgggtacgacattgttggag
atggctaaaaaatcaggaatggagggtataatcgcaaaggaaatttactcccactatgcg
ataggcacaagatcggagaactggttgaaaattaagttaagtaacagtattgacgctatc
atatgtgggtatgttgttgctgatcaaggagagacatttagttcaataatacttgggaaa
aaagaggctaatggaaatcttatttacataggtaattgcggtgtgggctttggaagtgat
ctgaaatatgatttgaaaagaattatgtcttcgtttgaaacattaaattcgccatttaaa
agctccataaaattaaagggaaaaaaagtgatttggcttcgtcccaagttggtttgcgaa
gtcaatttcagagaaaagacaaaaaacaaccttttgagacaacccgtctttaaaagagtg
gtgaattgggaagagcccgttatagattcaattgatcacgataactctttaataaatcgg
gatgaaccaattccaagaggaggcagtataaaagagtacgtcgatgttgatggattcaaa
gtacctatttcaaatttggacaaaatactttggaaggaatccaaaaaaagtaaataccat
ctaatagattactatttaagtatctccgattatataattccatacctaaaggataggcct
caaagtttacatagatttcccgaaggaattgaaaatgaaggcttttatcagaaggacgtt
gatttcttacccgaatgggctggaagcttgaatatctattcgaaatcaagtgatagggaa
attaattatctgctttgtcaaaatgcagcgacattactttacatggctaacttagggtgc
atcgagataaatccttggaattccagaaaatatagtctagaaaaacccgattatgccatt
attgatttagaccctccagtaaccaaatcattcagcgacattattatagttactaaagtt
ttggctgagttattgaatgaattacaactaaaatcatattataaactatctggttctaaa
ggaattcatgtgtatattccaatgggggcggaatatagctatgaggaggtacgtgatttt
attaaactgatttgtatagttgttgaaaagagattacctgaattaactactttgcaacgt
accatcaaaaagagaaatgggaaaatttatttggattatcttcagaacaggcggggtcaa
acagttgcttctacctactctattagaccactaccgaaggcgccaatttcgacccctttt
ctgttggaagaattgggacatattgacagtgcgcaatattttaccttaaatgatatacaa
caaaggattcttgatgtgggggatgtctttagccctatgctattcgaaaagtctaatctt
gaggattctttggaggaattagaaaaattactgtag

DBGET integrated database retrieval system