Euzebyella marina: D1013_09435
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Entry
D1013_09435 CDS
T05677
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
emar
Euzebyella marina
Pathway
emar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
emar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D1013_09435 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emar03400
]
D1013_09435 (ligD)
Enzymes [BR:
emar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D1013_09435 (ligD)
DNA repair and recombination proteins [BR:
emar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D1013_09435 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYN67571
UniProt:
A0A3G2L5X8
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All DBs
Position
2233702..2236137
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AA seq
811 aa
AA seq
DB search
MSLDEYNSKREFSTTSEPIGKISPIGGNNRFVIQRHSSRKLHYDLRLEIDGVLKSWAIPK
GPSLNPADKRLAVRTEDHPVSYLNFEGTIPKGNYGAGEMEIWDFGIYTVDGMNNVSEISI
SLKQGNLKLFFNGQNIKGNYSLVRTGWKSGKEQWLMIKKKDEFAVNGLYDAESFTDGTEN
FTYPKNLRPGLILSPMLATVRDKVFNDPNWIYELKWDGYRLIAHISDKGVLLQSRNGVSY
NSKFPILVDELKSLDNDVILDGEVVILNEQGISQFGELHNYPDSGGILRYYVFDMIYLNG
HSMLNLPLLDRKSLIPNVLEDLSITRFCDHIEGMGTTLLEMAKKSGMEGIIAKEIYSHYA
IGTRSENWLKIKLSNSIDAIICGYVVADQGETFSSIILGKKEANGNLIYIGNCGVGFGSD
LKYDLKRIMSSFETLNSPFKSSIKLKGKKVIWLRPKLVCEVNFREKTKNNLLRQPVFKRV
VNWEEPVIDSIDHDNSLINRDEPIPRGGSIKEYVDVDGFKVPISNLDKILWKESKKSKYH
LIDYYLSISDYIIPYLKDRPQSLHRFPEGIENEGFYQKDVDFLPEWAGSLNIYSKSSDRE
INYLLCQNAATLLYMANLGCIEINPWNSRKYSLEKPDYAIIDLDPPVTKSFSDIIIVTKV
LAELLNELQLKSYYKLSGSKGIHVYIPMGAEYSYEEVRDFIKLICIVVEKRLPELTTLQR
TIKKRNGKIYLDYLQNRRGQTVASTYSIRPLPKAPISTPFLLEELGHIDSAQYFTLNDIQ
QRILDVGDVFSPMLFEKSNLEDSLEELEKLL
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttagacgaatataatagtaaacgagaattttcaacaacttcggaacccattggt
aaaatttccccaattggcggtaataatcgatttgttatacaaagacattcttctagaaaa
ttacactatgatttaaggttagaaatagacggtgttctgaagagttgggccattccgaaa
ggtccttctttgaatcctgctgataaacgattagcggtgcggacggaagaccatccggtc
tcgtatctgaattttgagggtactattcccaaagggaattacggtgctggagaaatggag
atttgggattttggaatctacacggtagatggaatgaacaacgtctctgaaatttcaatt
tcccttaaacaaggaaatttaaaattgttctttaatgggcaaaatattaagggaaattat
tcattggttcgaactggatggaaatctggaaaagaacaatggcttatgattaaaaaaaag
gatgaatttgccgttaatggtttatatgatgccgagtcctttacagatggtacggaaaac
tttacttatcccaagaatctaaggccaggattaattctttctcccatgctagcaactgtt
agagataaggtttttaatgaccccaactggatttatgaattaaaatgggatggttataga
ttaatagcccatatttccgataagggtgttttgttgcagtcgagaaatggcgttagttat
aatagcaaatttccgattctggttgatgagcttaaatctctggataacgatgtaattttg
gatggggaggttgttatactaaatgaacaagggatttctcaattcggagaattgcataac
taccctgattccggcggtatcttgagatattatgtatttgatatgatctatttaaatggt
catagtatgctcaatctgcctttattggatcgaaaaagtttaattccaaatgtattagaa
gacttatccattaccagattttgcgaccatattgaaggtatgggtacgacattgttggag
atggctaaaaaatcaggaatggagggtataatcgcaaaggaaatttactcccactatgcg
ataggcacaagatcggagaactggttgaaaattaagttaagtaacagtattgacgctatc
atatgtgggtatgttgttgctgatcaaggagagacatttagttcaataatacttgggaaa
aaagaggctaatggaaatcttatttacataggtaattgcggtgtgggctttggaagtgat
ctgaaatatgatttgaaaagaattatgtcttcgtttgaaacattaaattcgccatttaaa
agctccataaaattaaagggaaaaaaagtgatttggcttcgtcccaagttggtttgcgaa
gtcaatttcagagaaaagacaaaaaacaaccttttgagacaacccgtctttaaaagagtg
gtgaattgggaagagcccgttatagattcaattgatcacgataactctttaataaatcgg
gatgaaccaattccaagaggaggcagtataaaagagtacgtcgatgttgatggattcaaa
gtacctatttcaaatttggacaaaatactttggaaggaatccaaaaaaagtaaataccat
ctaatagattactatttaagtatctccgattatataattccatacctaaaggataggcct
caaagtttacatagatttcccgaaggaattgaaaatgaaggcttttatcagaaggacgtt
gatttcttacccgaatgggctggaagcttgaatatctattcgaaatcaagtgatagggaa
attaattatctgctttgtcaaaatgcagcgacattactttacatggctaacttagggtgc
atcgagataaatccttggaattccagaaaatatagtctagaaaaacccgattatgccatt
attgatttagaccctccagtaaccaaatcattcagcgacattattatagttactaaagtt
ttggctgagttattgaatgaattacaactaaaatcatattataaactatctggttctaaa
ggaattcatgtgtatattccaatgggggcggaatatagctatgaggaggtacgtgatttt
attaaactgatttgtatagttgttgaaaagagattacctgaattaactactttgcaacgt
accatcaaaaagagaaatgggaaaatttatttggattatcttcagaacaggcggggtcaa
acagttgcttctacctactctattagaccactaccgaaggcgccaatttcgacccctttt
ctgttggaagaattgggacatattgacagtgcgcaatattttaccttaaatgatatacaa
caaaggattcttgatgtgggggatgtctttagccctatgctattcgaaaagtctaatctt
gaggattctttggaggaattagaaaaattactgtag
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