Euzebyella marina: D1013_18805
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Entry
D1013_18805 CDS
T05677
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emar
Euzebyella marina
Pathway
emar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1013_18805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emar03400
]
D1013_18805 (mfd)
Enzymes [BR:
emar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1013_18805 (mfd)
DNA repair and recombination proteins [BR:
emar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D1013_18805 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYN69288
UniProt:
A0A3G2LAK8
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All DBs
Position
4383408..4386833
Genome browser
AA seq
1141 aa
AA seq
DB search
MASVQEVCLSLCLKISRLTQIAFQQFYAQSPNTRKLGNAISNGQKSTVLNGLTGSSLSLV
VSEAFAIAKRPFLLIFNDKEEAAYYLNDLEHLMGEQDVLFYPGSYRRPYQIEETDNANVL
LRAEVLNRINSRKKPAIVVTYPDALFEKVVTRKELQKNTLKIKIDDSLSLDFLNEVLFEY
RFKRVDFVTEPGEFSVRGGIVDVFSFSHDQPYRIEFFGDDVDSIRTFDVESQLSTEKVEK
ITIIPNVANKLLEERRESFLQYIANETTVFIKNADFLFDRLDDFYKKAGEAFDKLSKEVK
HVEPEELFLNSESFKVQLQDLALVSMGTSSSLFLNAEEISFNTKPQPSFNKKFNLLIDDL
NAHKAKGYTNYIFCASEQQAKRFHAIFEDVSRKVYYETPVLPLYQGFIDDDLKIVCYTDH
QIFERYHKFQLKNGYAKKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEA
IKLMYGERDILYVSIHSLHKISKFNGKDGAPPKIFKLGSAAWKKLKQKTKTRVKKIAFDL
IKIYAKRRLEKGFQYDPDSYLQNELEASFIYEDTPDQSKATEDFKRDMESERPMDRLICG
DVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHFRTFSERLSDMPVTVDYLNRFRT
AKERRETLENLAAGKVDIIIGTHQLVNKNVKFADLGLLIVDEEQKFGVAVKDKLKSIKEN
VDVLTLTATPIPRTLQFSLMAARDLSVISTPPPNRYPIESRVVRLNEEVIRDAVSYEIQR
GGQVFFIHNRIENIKEVAGMIQRLVPDAKVGIGHGQMEGKKLEALMLSFMNGEFDVLVST
TIVESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCFFITPPYEVMTADARK
RIEALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILAEAIDELKE
NEFKELYEEVEGHKEKVFVKETQIDTDFELLFPDDYINNITERLNLYTELNSVNDENELQ
KFESQLVDRFGELPSEAEDLLNSVRIKWIANQIGIEKVVMKKSKLIGYFVADQQSAFYQS
ATFTRVLQFVQSHPQHCTLKEKQTRNGLRLLLTFGAITSIAKALQALAPFDKMAAPALAD
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggttcaggaggtatgcttatctttgtgcctcaaaatttcacgattgacccaa
attgcattccaacagttctacgcgcagtctcccaatacccggaaactaggaaatgctata
tccaatggtcaaaaaagcaccgttcttaacggacttaccgggtcatcactttcactggtc
gtatcagaagccttcgcgatagcaaaaagaccttttcttttaatattcaatgataaggaa
gaggcagcttattatttgaatgacttagaacatttgatgggtgaacaagatgttctcttt
taccctggcagttaccgcagaccctatcaaattgaagaaaccgacaatgcgaacgtctta
ctgcgtgccgaggtacttaaccgtatcaactccagaaaaaagccggcaattgtggttacc
taccctgatgcgctttttgaaaaagtagttacccgaaaagaacttcaaaagaacacccta
aaaatcaaaatagacgatagcctttcccttgattttttaaacgaggttctttttgaatat
cgattcaagcgggtagattttgttaccgaacccggcgaattttcggttcgtggcggtatt
gttgatgtattttctttttctcacgaccaaccgtaccgtatcgagtttttcggtgatgat
gttgatagcatacgcacctttgatgtagaaagtcagctttcgaccgaaaaggtggaaaaa
attaccataatacccaatgttgcgaacaagcttttagaggaaaggcgcgaaagctttcta
cagtacattgctaatgaaactaccgttttcattaagaatgccgatttcttgttcgaccgt
ttagatgatttttacaagaaagcaggtgaagcttttgacaaactctctaaagaggtaaaa
catgtggaacctgaagagctttttttgaattccgaatcgttcaaagtgcaacttcaagat
ttggcattggtttctatgggcacttcctcatctctatttctaaatgcagaggaaatcagt
tttaacaccaagcctcagccttctttcaacaaaaagttcaacttgttgatcgatgacctc
aatgcgcacaaggccaaaggttacaccaattatattttttgtgccagtgaacagcaggcc
aaacgttttcatgccatttttgaagacgtaagccgaaaggtgtattacgaaacccctgta
ctaccactttatcaaggttttattgacgacgaccttaagattgtctgttatacagaccat
cagatttttgagcgttaccataagtttcaactgaaaaacggatacgcgaaaaaacaggcc
atcactctaaaagaattgaacaaacttgagattggcgattatgttacccatatcgatcac
ggtataggtaaattcggtggattacaaaaaatcgatgttgagggaaaaaaacaggaggcc
atcaagttaatgtatggtgagcgtgatattctgtatgtgagtattcattcccttcataaa
atttcgaagttcaacggcaaagacggtgcgccgcccaagatttttaaactgggttcggca
gcttggaagaaactgaagcaaaaaaccaagacgcgcgtcaagaaaatcgcttttgacctc
attaagatttacgccaagcgtaggctggaaaaaggttttcagtatgaccctgacagttat
ttgcaaaatgagctggaagcctcgttcatatacgaagacaccccagaccaaagcaaagcg
accgaagattttaaacgtgacatggagagcgagcgcccgatggaccgtctcatctgtggg
gatgtaggcttcggtaaaacagaagtggccataagggccgcttttaaagctgttgataat
ggcaagcaagtagctgttttagtgccaaccacaattttggcgtttcaacactttagaaca
ttctccgagaggctaagtgatatgccggttactgtcgactaccttaatcggtttagaacg
gctaaagaacgtcgggaaactttagagaatttagccgctggcaaggtcgatattataatc
ggaacccatcaactggtgaacaaaaatgtgaagttcgctgatttaggactgttaatcgtt
gacgaggaacaaaaatttggggtagccgtaaaagacaaattaaagtcaataaaggaaaac
gtcgacgtactcaccctcacggcaacaccgatacccagaaccttacagttcagccttatg
gccgcaagagacctgtcggtaattagtacgccgccgcccaacagataccccattgaaagc
agggtagtaagattgaacgaagaagtaatcagggatgctgtttcgtatgaaattcagcga
ggagggcaggttttctttatacacaaccgcatcgaaaacatcaaagaggtagctggtatg
atccagcgtttggtgcccgatgccaaagtaggtattggccatgggcaaatggagggcaag
aaactagaggcactcatgttaagtttcatgaacggtgaatttgatgtcttggtttcgacc
actattgtcgaaagcggccttgatgttaccaatgcgaataccattttcatcaacaacgct
aataacttcggactaagcgatttgcaccagatgcgaggccgtgtcggcagaagtaacaaa
aaggccttttgcttttttatcaccccaccgtatgaagtaatgacggccgatgcccgaaaa
cgcatagaagcacttgaacagtttaccgaattaggtagtggttttaatattgccatgaaa
gatttggagattcgcggtgctggtgaccttttaggaggagaacagagcgggtttataaac
gaaatcggctttgatacctaccaaaagatattggcggaggccattgacgaactgaaagag
aatgagtttaaagaactttatgaagaggttgaggggcataaggaaaaagtctttgtgaaa
gaaacccagattgacaccgattttgaacttctttttcctgatgattacatcaataacatc
accgaacgcttgaatctatataccgaacttaattcggttaacgatgagaacgagcttcaa
aaatttgaatctcaactcgttgaccgtttcggagaacttccttcagaggctgaagacctt
ttgaattccgttcgtatcaaatggatcgctaatcaaataggtattgagaaggtagtaatg
aaaaagagtaagctaatcggctattttgttgccgatcaacagtcggctttttatcaaagt
gcgacctttactagggtgttacaatttgtgcaaagccatccacaacattgtactttaaaa
gaaaaacaaacaagaaatggcttaaggttattgttaacctttggcgctattaccagtatt
gcaaaggctcttcaagcattggcaccctttgacaaaatggccgcacctgccttggccgac
aaataa
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