Eublepharis macularius (Leopard gecko): 129326273
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Entry
129326273 CDS
T09084
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129326273 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emc03400
]
129326273 (LIG4)
Enzymes [BR:
emc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129326273 (LIG4)
DNA repair and recombination proteins [BR:
emc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129326273 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
MCEL_GT_NTPase
Motif
Other DBs
NCBI-GeneID:
129326273
NCBI-ProteinID:
XP_054830436
UniProt:
A0AA97KUM8
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All DBs
Position
1:complement(29595893..29601941)
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AA seq
910 aa
AA seq
DB search
MSSIPASHSQVTVASQVPFTDLCSTLEQIQKCKSRPEKTKYFKDFLDSWRKFHDALHKNE
KDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIEILNLPKEGKDALKLLNYRTPAG
SRGDAGDFAVTAYFVLKPRCIKQGLLTVQQVNVLLDSVSTNNAAKRKDLVKKSLLQLITQ
SSALEQKWLIRMIIKDLKLGVSQQTLFSIFHPDAAELFSVTTDLEKVCKQLHDPSVSLSD
VSISLFSAFKPMLAAIADIQQIEKQMNHQSFYIETKLDGERIQMHKDGDVYKYFSRNGYD
YTQQFGASPLEGSLTPFVHNVFHENVQNCILDGEMMAYNPTTQSFMQKGNKFDIKRMVDD
SELQTCFCVFDVLMLNSQKLGHEILSKRYEILNKIFTPITGRIQVVLKRQANARKEVIDA
LNEAIDNREEGIVVKDPMSVYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGLRG
GMMSHFLCAVAEIPPPGEKPSVFHSVCRIGSGYTMKELYDLGLKLAKHWKPYRKKDPPGN
ILCGTEKPEVYIEPCNSVIVQVKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWYECMTLD
LLEQLRGKASGKLATKHFDIDHEEPQVKKRKTVPKVKKIIGVMDHFKAPDLSNVSKLSSI
FEDVEFCVMTGTESCSKNELESKIAEFGGSVVQNPGPDTYCVVVGTENIRVKNIISSNKH
DVVRAEWLLQCFEKRAFVPWQPVFMIHMSSETKQHFACKYDQYGDSYAADIDAVQLKELF
SRMSHLKEEISWDVIADTEERYSWDCSPLSMFRQYTVYLDLSDEESDLRHKVNRTRLLTG
ALMLRFHGARVASRLEEGVSHVIIGEDHGRVKDIKAVRRTFKRKFKILSEQWVKDSVKAG
ELQNEEAYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccatccctgcttcccattcacaggtgactgtggcgtcacaagttccttttaca
gatctctgctcaactttagaacagatccagaaatgtaaatcccggccagagaaaacaaag
tacttcaaagattttttagattcctggaggaaatttcatgatgcccttcataaaaatgaa
aaagatgtgaccgattctttttatcctgcaatgaggcttattcttccgcagttggaaaga
gagaggatggcttatggaattaaagaaactatgcttgcaaagctctacattgaaatacta
aacttacccaaagagggaaaagatgctttaaaacttttaaattatcgaacacctgctggc
tcacggggagatgctggggattttgctgtgactgcctattttgtgctgaagccaagatgc
atcaagcaaggtctattaaccgtacaacaagtgaacgttctactagattcagtttctacc
aataatgctgctaaaaggaaagatttggtcaagaagtctcttctgcagttaataactcag
agctcagctcttgaacagaagtggctgattagaatgatcataaaggatttgaaactcggt
gtcagccaacaaaccttattttccatcttccatcctgatgctgcagagttgttcagtgtt
acaaccgacctggagaaggtttgcaaacagttgcacgatccgtctgtgtctcttagcgat
gtttccatttcgctgttctctgcttttaaaccgatgcttgctgcaattgccgatatacaa
caaattgaaaaacaaatgaaccatcagagtttctatatagaaaccaagttggatggcgag
cgaatacagatgcacaaagatggggatgtatacaagtatttttcacgaaatggatatgat
tatactcagcagtttggtgcatctccccttgaaggttcattgacgccgtttgttcataat
gtttttcacgagaatgtccagaactgcattctggatggcgaaatgatggcctacaacccc
acaacacaatccttcatgcagaaaggaaacaaatttgatatcaaaagaatggtggatgat
tctgaattgcagacctgcttctgcgtgtttgatgttctaatgctgaacagccagaagttg
ggtcatgagatattgagcaaaagatatgagatactgaataagatctttacaccaataaca
ggccgtatacaggttgtccttaaacgccaagctaatgcccggaaagaagtgatagatgct
ctaaatgaagctatagataacagggaagaaggaattgtggtcaaagatcccatgtcagtt
tacaagcccgataaacgtggagaaggatggctgaagatcaaaccagaatatgtcagtggg
ctgatggatgaactagaccttttaattgttgggggctactggggaaaaggcctccgtggt
ggcatgatgtcccattttctatgtgcagttgctgagattcctccacctggtgaaaaacca
tctgtatttcattccgtttgtcgcattggttctggctacactatgaaggagctgtatgat
cttggcttgaaattagccaaacactggaaaccatatcgtaagaaggatcctcctggtaac
atcttgtgtgggactgagaagcccgaggtctatattgaaccttgtaattcagtcattgtt
caggtgaaagcggctgagattgttagtagcgatatgtacaaaactgactgtacgttgcgt
ttccctcgaattgagaagataagagaggataaagaatggtatgaatgcatgactcttgac
cttttagagcagctcagaggtaaggcttcagggaagctagctacgaagcattttgatatt
gatcacgaggagccacaagttaaaaaacgtaaaacggtgccaaaggttaaaaaaataatt
ggagtaatggatcattttaaagcccccgatctttctaatgtaagcaaactttccagcata
tttgaagatgttgagttttgtgttatgactgggacagaaagctgttcaaaaaatgaacta
gaaagcaaaatagcagagtttggcggtagcgtagtacaaaaccctggtccagacacatac
tgtgtagttgtagggacagagaacatccgagtgaaaaatattatttcttctaacaagcat
gatgttgtgagagccgagtggcttttgcagtgctttgaaaaacgggcatttgtgccatgg
cagccagttttcatgattcatatgtcctctgaaacaaagcaacactttgcctgcaagtac
gaccagtatggcgatagttacgctgctgatattgacgcagtccagttaaaggagttgttc
tcaaggatgagtcatttaaaggaggagatctcttgggatgtgattgctgacacagaagaa
cggtattcctgggactgctctccgctcagtatgttcaggcagtacaccgtttacctggac
ctctctgatgaagagagcgatctgagacataaagtgaatcggacaagactgttaactgga
gcgctgatgcttcgctttcatggagcaagagtcgcctctcggctggaggaaggggtatcc
catgtcatcattggggaggatcatggccgtgtaaaggatataaaggcagtcagacggacg
tttaaaaggaagtttaaaattctatctgaacagtgggtgaaggattctgtaaaggctggg
gaattacaaaacgaagaggcttacttaatttaa
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