Eublepharis macularius (Leopard gecko): 129330196
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Entry
129330196 CDS
T09084
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03013
Nucleocytoplasmic transport
emc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129330196 (UPF1)
03015 mRNA surveillance pathway
129330196 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129330196 (UPF1)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129330196 (UPF1)
5.6.2.5 RNA 5'-3' helicase
129330196 (UPF1)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129330196 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129330196 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129330196
NCBI-ProteinID:
XP_054836165
UniProt:
A0AA97KYU8
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All DBs
Position
5:12675883..12705963
Genome browser
AA seq
1125 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGGGAGAQG
TPGAPGGGGGGPPSAVVAGQLDAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDT
YYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHK
DGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPL
IQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHV
LLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDS
DMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVD
FVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLN
HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTE
KIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE
KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL
GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP
SNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAAN
VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGR
EKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYY
KEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQ
GRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGNPK
GKTSRGGRQKNRFGMPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGL
SQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctgactttcctggacaccgaagag
gccgagctgctgggcgccgacactcaaggctccgagttcgagtttaccgacttcaccttg
cccagtcagacccagacgccgcccgggggaggaagcggaggaggtgccggcgcccaagga
acccccggggcgccgggaggaggaggaggggggccgccctcagccgtcgtcgccgggcag
ctcgacgcccaggtcaatgggcctgatggcatcctccaaaatggtgcagtggatgataat
gtggcgaagaccagccagctcttagcagaactcaattttgaggaagatgaagaagacaca
tattataccaaagaccttcctgtgcatgcttgcagctactgtggcatccatgacccagct
tgtgtggtctactgcaacaccagcaagaagtggttctgcaacggtcgtgggaatacctct
ggcagccacattgtgaatcatcttgtgagggccaaatgtaaggaggtgactcttcacaaa
gatgggcccttgggagagacggtcttggagtgctacaactgtggttgccgaaacgtgttc
ctcctcggcttcattcccgccaaagcggactctgtggtggttttgctgtgcaggcagcct
tgtgccagtcagagcagcttaaaggatatcaactgggacagttcacaatggcagcctctg
atccaagaccgctgcttcctttcctggctggtcaagattccttctgagcaggaacagctg
agagctcggcagatcacggctcagcaaataaacaagctggaggaactgtggaaggaaaat
ccttctgccacccttgaggacttggagaaacctggtgtcgatgaggagccgcagcatgtc
cttcttcgatatgaggatgcttatcagtaccagaacatcttcgggccactggtcaagctt
gaggcggactatgacaagaaactcaaggagtctcagactcaggacaacatcaccgtgaga
tgggatctgggcttgaacaagaaaagaattgcttacttcaccttgccgaagaccgactca
gatatgcgtctgatgcagggagatgaaatctgcctgaggtacaagggggatttggcccca
ctgtggaaaggaattggccatgtcattaaagttccagataattatggcgatgaaatcgct
attgagctgaggagcagcgttggtgcccctgtggaggtgacccataacttccaggtggac
tttgtgtggaagtcgacctcttttgacagaatgcagagtgcactcaaaacgtttgctgtg
gatgaaacctctgtgtccggctacatctatcacaagctgcttggtcacgaggtggaagat
gtcatcatcaagtgtcagctgccaaaacgttttactgcacaaggtcttcctgacctcaat
cattctcaggtgtatgctgtgaagactgtcctgcagcgtccattgagccttatccagggt
cctcctgggacaggcaagactgtgacatcagctaccattgtttaccacctggctaggcaa
ggaaatggacctgttctggtttgtgctccgagtaacatagctgtggaccagctgactgag
aagatacatcagaccggactgaaagtggtgcgtctgtgtgccaagagccgggaggcaatt
gactcgccagtatctttcctggcactgcacaatcagatcagaaacatggacagtatgcct
gagctccagaaactgcagcaactgaaagatgaaactggagaactctcctctgcagatgaa
aagcgctaccgggcactcaagcgaacggctgagcgggaattgctgatgaatgcagatgtc
atctgctgcacatgtgtgggagccggcgacccgaggctggccaaaatgcagttccgttcc
attttgattgacgagagcacccaggccactgagccagaatgtatggtgccggttgtcctc
ggggcaaagcagttgatcctggtgggcgaccattgccagcttggccctgttgtgatgtgc
aagaaggcagccaaagccggcctatcccagtctctctttgagcggctagtggtactgggg
atccgtcctattcgcttgcaagtgcagtaccgcatgcaccctgccctgagtgcgtttcct
tccaatatcttttacgaggggtctctccagaatggcgtcacagcagcagaccgtgtgaaa
aagggatttgacttccagtggcctcagccggataagcccatgtttttctatgtaacccaa
gggcaagaggaaattgcgagctctggcacatcttacttgaacaggacagaggctgcaaat
gtggagaagatcaccactaaactgctgaaggctggtgcaaaaccagatcagattggcatt
atcaccccctatgagggacagcgctcctacctggtgcagtacatgcaatttagcggctcc
ctccacaccaagctttaccaggaggtggaaattgccagtgtagatgcctttcaagggcga
gagaaggacttcatcatcctgtcctgcgtcagagccaacgaacaccaagggattggtttc
ctgaacgatccccggcgtctcaacgtagctctcacccgagcaaggtacggtgtaattatt
gttggaaacccaaaggctctgtccaagcagcctctctggaatcacctgctgaactactac
aaggagcagaaagtactagttgagggtcctttgaacaacctccgagagagcctcatgcag
ttcagcaagcctcggaagctcgttaacaccatcaacccgggagcccgattcatgacaact
gccatgtatgatgcccgtgaagctattatccctggatctgtctatgatcgcagcagccaa
ggccgcccctccaacatgtattttcaaacgcacgatcagattgggatgattagtgccggg
ccgagccacgtcaccgccatgaacattcctatcccattcaacttggtgatgcctccaatg
cctccgccaggatattttggacaggccaatgggccagctgccgggcgtgggaatccaaaa
ggcaagaccagccgtggtggacgccagaagaatcgttttgggatgccaggagctagccag
tcaaacctccccaacagccaggccagtcaagatgtggtgtcacagcccttttctcagggc
cccttgactcagggctacatctccatgagccagccgtcacagatgagccagccaggcctc
tcccaaccagaactgtcgcaggacagttaccttggtgacgagtttaaatctcagatcgac
gtggccctgtcgcaggattctacctaccagggggaacgcgcatatcaacatggagtgacg
ggactgtcacagtattag
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integrated database retrieval system
