Eublepharis macularius (Leopard gecko): 129340106
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Entry
129340106 CDS
T09084
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03030
DNA replication
emc03410
Base excision repair
emc03420
Nucleotide excision repair
emc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129340106 (LIG1)
03410 Base excision repair
129340106 (LIG1)
03420 Nucleotide excision repair
129340106 (LIG1)
03430 Mismatch repair
129340106 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emc03032
]
129340106 (LIG1)
03400 DNA repair and recombination proteins [BR:
emc03400
]
129340106 (LIG1)
Enzymes [BR:
emc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129340106 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129340106 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129340106 (LIG1)
DNA replication proteins [BR:
emc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129340106 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129340106 (LIG1)
DNA repair and recombination proteins [BR:
emc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129340106 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129340106 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129340106 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
129340106
NCBI-ProteinID:
XP_054850665
UniProt:
A0AA97K6K2
LinkDB
All DBs
Position
12:54861291..54884092
Genome browser
AA seq
923 aa
AA seq
DB search
MQSTIRSFFQPLAQVKPGKAIAEKKQPEDKLTPKKEPINSDQFVNGATLHEDSSEKSVSK
QATQVLNGGGDEDSGKPGRRDTEADDTKQELDCVPEQKIPGENISPNTSPAASNSPSPSS
IPRRRTARKQIPKRKVEIDVSRQDGTQEEQCAKKQKTDSAGEGSKEEPDEKPVEAEVKDE
DAKMVKDKTEKEEEAEKADEEKMLTTPKPSSQLISSFFAPRKASVKAEKKSTPVKGENMP
TQKNHSEVGSHESGSTAGSSLKSSPTLDPADYNPMKGNYHPVHDACWGPGQRVPYLAVAR
SFEQIEEESARLKIIETLSNLYRSVIALSPEDLLPCVYLCLNRLGPAYEGLELGIGKTIL
MKALAQATGRQLDQIKAEAAEKGDLGLVAESSRTTQGIMFAPPKLGAAVVFGKLQAIGRM
TGSSSMNKKIDIIKTLFVACRYSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQ
KFPPEILDAAKGKSAEARKTWLDERALIVKQAFCELPNYDTIVPVLLQHGVESLPQHCKI
TPGIPLKPMLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENN
TSKYPDIVSRIPKVKKSTVHSCILDAEAVAWDPHSKQIQPFQVLTTRKRKDVDAAEIRVQ
VCVYAFDMLYLNGQSLVREPLAQRRAMLHDAFTEVEGQFLFASSMDTSNTDEIADFLECS
IKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGI
YGGYLLACYDEESEEFQSICKIGTGFTEEDLEKLHASLKDHVIPQPRPYYRWGGTAEPDH
WLEAQHVWEVKCADLSISPVHKAAIGLVDEEKGISLRFPRFLRIREDKKPEEATASTQVA
ELYRKQQQIQNQQSVEKGDDDFY
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaccatcagatcattcttccagcccttagcccaagtaaagcctggaaaagcg
atagcagagaagaagcaaccagaagataagctaacccctaaaaaggaaccaataaattct
gaccagtttgtgaatggtgcaaccctccatgaagattcctctgagaaaagtgtatccaaa
caagccactcaggtccttaatggtggaggtgatgaagattctgggaaaccaggaagaagg
gatacagaggcagatgatacaaagcaggaactggactgtgtacctgagcaaaagatacct
ggagagaacatctccccaaacaccagcccagctgcctctaattctccctcaccttccagc
attcctcggcgcagaactgcccgcaaacagatccctaaacgtaaagtggagatagatgtc
agcaggcaagatggcacccaggaggagcagtgtgccaaaaaacagaagacagacagcgct
ggggaaggttcaaaagaggagccagatgagaagccagtggaagcagaagtgaaagatgag
gatgctaagatggtgaaggataaaacagagaaagaagaggaagcagaaaaagcagatgaa
gagaagatgcttacaacacccaagccatctagccaactcatttctagtttttttgcccct
aggaaagcttccgtgaaagcagaaaaaaagtctacacctgtgaagggggaaaatatgcct
acacaaaagaaccatagtgaagtcggtagccatgagtctggcagcacagctggcagttct
cttaagtcatctcccacacttgaccctgcagattataaccccatgaagggcaactatcat
cctgtccatgatgcttgttggggccctggccagagggtaccgtatctggctgtggcccgg
tcctttgagcagattgaagaggagtctgcccggctgaaaatcatagagactctgagcaac
ctgtatcgctctgtgattgctctgtctcctgaagacttgctgccatgtgtctacctctgc
ctcaatcggctaggcccagcatatgagggcctagagctgggaattggcaaaaccatcctc
atgaaggctttagctcaagccacaggccggcagctggaccagatcaaggcagaggcagca
gagaagggggacctaggtttggttgctgagagtagccgcaccacccagggcatcatgttt
gctccacccaagcttggtgctgctgtagtctttggcaagttacaagcaattgggcgcatg
acaggaagctcttctatgaacaagaagattgacattatcaaaaccttgtttgttgcttgt
cgctactcagaagctcgctatgttgctcggtcattggaagggaagctgcgaattgggcta
gcagagcagtctgtcctgtcagccctggcccaggcagcatcactcacacctccaggacaa
aaattccccccagagattttggatgctgctaagggcaaatctgcagaggcacgaaaaacc
tggctggatgagagggccttgattgttaaacaggctttctgtgagctgccaaattacgac
accattgtgcctgtcctcctacagcatggtgtggagagcctgcctcagcactgcaagatc
acaccagggatcccattgaagccaatgctggcccacccaaccaaaggtatcggggaagtc
ttaaagcgatttgaggaagcagctttcacttgtgaatacaaatatgatggggaacgggca
cagatccacatcctggaaaatggggaagtgcacatttacagcaggaaccaagagaataac
acatccaagtatcctgacattgtcagccgtatccccaaggtgaaaaaaagcactgtgcac
tcatgcatcttggatgcagaggctgtggcctgggacccacattcaaaacagatccagcct
ttccaggtactgaccacccgcaagcgcaaggatgtggatgctgcagagatccgagtacaa
gtatgtgtgtacgcatttgatatgctctacctcaatgggcagtctttggtacgggaaccc
ctagctcaacgccgggctatgctgcatgatgctttcactgaggttgaaggccagttcctc
tttgcctcctccatggatactagtaacactgacgaaatagcagatttcctggagtgctcc
atcaaagactcatgtgaggggctaatggtgaaaacattggaagtggatgccacatatgaa
attgcaaagagatcccacaactggctgaagcttaaaaaagattacctggaaggtgttggg
gacacactggacctagtggtgattggtgcttacctgggaaagggcaaacgtgcaggcatc
tatggaggctacctcttggcttgctatgatgaggaaagtgaggagttccagagtatctgc
aagattggcactggattcacagaagaggacctggagaaacttcatgcttccctcaaggac
cacgtgattccacagccacgcccatactaccgctggggtggaacagctgaacctgatcat
tggctagaggcccaacatgtctgggaggtgaagtgtgctgacctatccatttctcctgtt
cacaaggcagccattggtttggtggatgaggaaaaggggatttctctacgcttccccaga
ttccttcgcatccgagaagataagaaaccggaagaggccactgccagcactcaggttgct
gagttataccggaagcagcagcagatccagaaccagcagtcggtggaaaaaggagatgac
gatttttactag
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