Elizabethkingia meningoseptica: BBD33_04750
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Entry
BBD33_04750 CDS
T04744
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emg
Elizabethkingia meningoseptica
Pathway
emg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBD33_04750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emg03400
]
BBD33_04750
Enzymes [BR:
emg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBD33_04750
DNA repair and recombination proteins [BR:
emg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBD33_04750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Maelstrom
Motif
Other DBs
NCBI-ProteinID:
AQX04600
LinkDB
All DBs
Position
1001366..1004722
Genome browser
AA seq
1118 aa
AA seq
DB search
MQLTSIKKTLLPDLLKKQWGKEVFDTLREKEKISIKGAAGSSINVIAAEYFVSFNQSMLI
VLDDKEDALYATAELEELCGKENVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKS
PKVIVAYAAALSEKVVKKEEFGKFSHTIKVGELLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEYPFRVSFFGNEVDSIRTFDIESQLTQEKVDEFQLVSAIQDVSGDT
AKTPLFGLLPKDAVIFTKNAFLGVKHIRKFFSKAEDIYQTLHQDIKYSEPKAIFVSEDEF
LNHINQFVWADFTSDTLKSSRAELQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKERLESIFEELEKNIPFRSFASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPEGKAIVLSKLGSSAWKTLKQKTKARVKQIAFDLIKLYAQRKSAKGFAF
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTIMDRLVCGDVGFGKTEVAIRAAF
KAAVDGKQVAILVPTTILAFQHFRSFKERLKDFPVEISYLNRFRTAKQKKETLEGLASGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKAMKTDIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTRLVGFNEEILRDAVSYELQRDGQVYFINNRIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSADSRKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERQK
LFSSTKDVNIDTDLELMLPDDYVNSTEERLLLYQKLAEVKNSAELNRYEYELKDRFGALP
KEAVNLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSERFKKIIQYLGANP
QHAQLKEKHSPEGNQLMMRKDRISNVDEVNALLTSMLN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattaacttctattaaaaaaacattattacccgatttgctaaaaaaacaatggggt
aaggaagtctttgatacgcttcgggaaaaagaaaaaataagcataaaaggtgcggcaggt
tcttccatcaatgttatagctgcagaatattttgtgtctttcaatcagtctatgcttatt
gtactggatgataaagaggatgcgttatatgcaacagcagagcttgaagagctctgtgga
aaagaaaatgttttgtatttcccggctacctttttggagccttatcagatagaaaagaca
caaaatgcaaacagagtattgcggacagaagttattaatcagctgaattcctccaaatca
cccaaagttattgtggcttatgcagctgctctttctgaaaaagtagtgaagaaagaagag
ttcggaaaattctcacatacaataaaagtcggggagctgctggattttgactttatagat
gaacttctgaatcattataaatttaatcggacagattttgtttcggaacccggagaattt
tctgtacgcggaggaattattgatgtcttttcctatgcatatgaatatccgttcagggta
agcttttttggtaacgaagtggatagtatccggacttttgatatagaaagccagctgacg
caggaaaaagttgatgaatttcaattggtttcagcaatacaggatgtttccggtgataca
gcaaaaacacctttgtttggattacttcccaaagatgccgtaatatttactaagaatgct
tttttaggcgttaagcatatccgtaagtttttttcaaaggcagaagatatttatcagact
ttacaccaggatataaaatatagtgagcctaaggctatttttgtttcagaagatgaattt
ctgaatcatattaatcaatttgtgtgggcagattttacgtctgatacactgaagtcttca
cgggcagaacttcagctaaaactcacgcagcagcctgttttcaataaaaactttgaatgg
ctgattcaggatcttgaagataaactggagaaggggtatgatgcatggatttctttttct
tcggagaaacaaaaagagcgtctggaaagtatttttgaagagctggaaaaaaatatcccg
ttcagaagctttgcctcagaacttcatgagggctttgtagataatgaaaataagatttct
gtatataccgaccatcagattttcgacaggtaccaacgctacaaagcaaagaatgctttt
gcaaaaagtgaacagttaacactaaaggatctgatgtccctgaaagtgggagattatatt
acccatattgatcacggaatcggtaagtttatgggactggttaaggtcaataacaatggt
aaggtgcaggagtgttttaaactatcctataaaaacggtgacttgctctatgtaagtatt
catgcgctacacaagatatccaaatataatggcccggaggggaaagctattgtactgagt
aaactgggatcctccgcatggaaaaccctgaaacagaaaacaaaagcaagagttaagcaa
attgcatttgacctgattaagctgtatgcgcagcgtaaaagcgcaaaaggttttgcgttt
tctccggatggttatatgcagaatgagctggaggcttcatttatttatgaggatacaccg
gatcaggagaaggcaacaatggatgtgaaagcagacatgcaggctgatactataatggac
agactggtgtgtggggatgtagggtttggaaaaacagaagtggcgatccgtgcagcattt
aaagcagctgtagatggcaagcaggtagcgattctggtgcctactacaattttggcattt
cagcatttcaggagctttaaagaaagattaaaagatttccctgttgaaatttcatacctc
aaccgtttcagaacggcaaagcagaaaaaagaaacacttgaaggattggcttccggaaaa
atagatattgttatcgggacgcatcaattggtaggtgccagcgtgaagtttaaagatctg
ggcttactgattattgatgaggaacataaatttggcgttgcgataaaggataagctgaaa
gccatgaaaacggatattgatacgctgacattgacggcaacacctattccaagaacatta
cagttttctcttatggccgcaagagatctttcggtgattaagactcctccgccaaaccgt
cagccggttgataccagactggtagggtttaatgaggagattctcagagatgctgtcagt
tacgaattgcaacgcgacggacaagtctattttattaataaccggattgaaaatcttaaa
gagattgcaggacttattcagcgcctggtgcctgatgcgagagtaattaccggccacgga
cagatggatggtaagcagctggaggctaatatgatggattttatggaagggaaatacgat
gttctggtttctacaactattgtagaaagtggattggatgtccctaatgccaacactatt
ttcattaatgatgcacaacgcttcggaatggcggaccttcatcagatgcgcggtagagtc
ggacggagcaacagaaaagcattttgttatctgattacgccgcctatggatctggtttct
gcggattcgcgtaaacgtctggaagcaattgagcagttttctgatttgggaagcggattc
catatcgcgatgaaagatttggaaatacgcggtgcaggtgatttgctggggggagaccag
agcgggtttattaacgaaatgggatttgatacctatcagaagattatgcaggaggcactg
gaagaactgaaggatgaagatatggaaggcttattccagaatgaggaagaacgtcagaaa
ctctttagctcgactaaagatgtcaatattgatacggatctggaactgatgttgccggat
gattatgtaaacagtaccgaggaacgtttgctattataccaaaagctggctgaagtgaaa
aattctgcagagctgaatcgttatgaatatgaactgaaagacagattcggagcgctgcca
aaagaagctgtgaatttgttgaagagtattgagttaaagtggttagcggctgatattggt
tttgataaaattgtaatgaaaaacggaatatttctgggatacttccctggcaatccacag
gataagttttatcagagtgaaaggtttaaaaagattattcagtatcttggtgccaacccg
cagcatgcacaattaaaagaaaaacattcaccggaaggaaatcagctgatgatgcgtaag
gacagaatatcgaatgtagatgaggtgaatgctttgttaacgagtatgctgaattaa
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