Endozoicomonas montiporae: EZMO1_2411
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Entry
EZMO1_2411 CDS
T09822
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emp
Endozoicomonas montiporae
Pathway
emp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EZMO1_2411 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emp03400
]
EZMO1_2411 (mfd)
Enzymes [BR:
emp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EZMO1_2411 (mfd)
DNA repair and recombination proteins [BR:
emp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EZMO1_2411 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Tex_YqgF
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMO56506
UniProt:
A0A142BCN0
LinkDB
All DBs
Position
complement(2663959..2667417)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSQASLPLPTHAGDKIIWANLDQTASAYAIASAARDSSKPLLVITPDSNRANSLEEELNF
FLNGNNQVEIMHFPDWEILPYDAFSPHQDIVSQRLETLYRLPRCHHSILIISITTLLHRM
SPRSYLESNCLMISRGDQFLLEQRRQQLEQAGYRCVDTVYEHGEFAIRGALMDIFPMGAD
QPFRIDLFDDEIDTLRAFDPETQRSTEQVDSIELLPGHEFPMDKASRDQFRSRFRDTFDV
DHRECPMYQDIGQGMASPGIEYYLPLFFEETATLLDHLPEKTIVVQCQGVQDALQHFWKD
VNDRYENRKVDPLRPLLPPHRVMMPPEELNAKLLDYGKARLETAEVQAKQGRYNLSRLPL
PELTLNARADNPLAPLETFIASGPRILVVAESAGRREVLLEMLAQNQIKPVEFANWSTFL
GHSESLGITLGSLEAGLHLAEHNIALIPEALLLGQRVMQKRRRRGDSEYQSDQVIRNLTE
LREGAPVVHIDHGVGRYRGLQTLSIDAQEAEFLTLEYASEAKLYVPVASLHLVARYTGTD
DELAPLHRLGSEQWSKARRKAAEKARDAAAELLDIYARREALQGFAFDSPDQHYHAFSAG
FPFEETPDQQQAIESVINDMTASQPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAILV
PTTLLAQQHYESFRDRFADWPMEIDVVSRFRSAKQVQGLKEKLQEGKIDIIIGTHKILQG
DLQFKNLGLLIIDEEHRFGVRHKEKLKSLRSEVDILTLTATPIPRTLNMAMSGIRDLSII
ATPPAKRLSVKTFVRQHDDQLIKEAVLRELLRGGQVYYLHNEVSSIEKAAEDLQSLIPEA
RIGIGHGQMRERELEQVMSDFYHKRYNILVCTTIIETGIDVPSANTIVIHRADKFGLAQL
HQLRGRVGRSHHQAYAYLMTPSPKSMTKDATKRLDAISEAQDLGAGFMLASNDLEIRGAG
ELLGEDQSGQIQSVGFTLYTEMLEKAVNAIRRGETPNLDKPLQQGTEVNLRLPALLPEDY
IHDVHNRLILYKRIAAANSNNDLKALQVELIDRFGLLPEQAKNLFRQTRLRLTAEKLGII
KLDAGEGSIRIEFEEQPKIDPLAIIQMIQADPHLYKLEGSSVFKYSAPNSGAMEQPEQRF
AGVESLLQRLAG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggcaagccttcctctgcccacccacgcgggtgacaaaattatctgggccaat
ctcgatcaaaccgccagtgcctatgccatagccagtgcggccagagacagtagcaagcct
ctgctggtgattacccctgactcaaacagagccaacagtcttgaagaagaactgaatttt
tttctcaacggcaataaccaggttgaaatcatgcatttccctgactgggagattttgccg
tacgatgccttttcaccgcatcaggatattgtttcccaacgcctcgaaaccctgtatcgc
ctgccccgttgtcatcactcgatcctgatcatttccattaccaccctgttgcaccgaatg
agcccgcgcagctatctggaatccaactgcctgatgatcagtcggggcgatcagtttctg
ctggaacaacgtcggcaacagttggagcaggcagggtatcgctgcgttgatactgtttat
gagcacggtgaatttgccatccgtggtgcgctgatggacatattccccatgggcgctgat
caaccgtttcgtatcgacctgtttgacgatgaaatcgacaccctgagagcttttgatccc
gaaacccagcgctctacggaacaggtagacagtattgaactgttgcccggccatgaattc
cctatggataaagcatcccgtgaccagttccgcagtcgtttccgcgacacctttgatgtg
gatcaccgggaatgtccgatgtatcaggatattggtcagggcatggccagtccggggatt
gagtattatctgcccctgttctttgaagaaacagccaccctgctcgaccacctgcctgaa
aaaaccattgtcgtacagtgccagggggttcaggatgcccttcagcatttctggaaagac
gtcaacgaccgttacgaaaaccgtaaagtagatccactccgtcctttgcttccgcctcat
cgggtgatgatgccaccggaagaactgaacgcgaagctgcttgactatggtaaagcgcgt
ttagaaacagcagaagtacaagctaagcagggtcgttacaacctcagtcgcctgccgttg
cctgagctgacattaaatgccagagccgataatccgttagcaccgctggaaacctttatt
gcctcaggcccgcgtattctggtggtggcagagagtgccggtcgccgcgaagtgcttctg
gaaatgctggcacagaaccagatcaaaccggttgaatttgctaactggtcaaccttcctg
ggtcacagcgaatcgctgggcatcactctgggttcgctggaagcaggcctccaccttgca
gaacataatattgccctgattcccgaagccctgttgcttggtcagcgggtgatgcagaaa
cgtcgccgtcgcggcgacagtgagtaccagtccgatcaggttatccgcaacctgacagaa
ctccgggaaggtgcaccggtggtgcatattgatcatggtgtaggtcgttatcgtggttta
cagacactctctattgatgcacaggaagccgaattcctgactctggagtacgccagtgag
gctaaactctacgttcctgttgcatccttgcacctggtcgcccgctacaccggcaccgac
gatgaactggcccctttacatcgtctgggcagtgagcaatggagcaaagcccgccgcaaa
gccgctgaaaaagcccgggatgctgcagccgaactgctggatatttacgctcgtcgtgaa
gcccttcaaggctttgcctttgactcccccgaccaacactaccatgccttcagtgccggt
ttcccgttcgaggaaacaccggatcaacaacaggccattgaatccgtcatcaacgatatg
accgccagccagcccatggaccggttggtctgtggtgatgtcggctttggtaaaaccgaa
gttgccatgagggcggcctttatagcggttcaaagtggcaaacaggtggccattctggtt
cccaccactttgctggcacaacaacattatgaaagcttcagggatcgctttgctgactgg
ccgatggaaattgatgtggtctcccgcttccgttcagccaaacaggtgcagggactgaaa
gaaaaactgcaggaaggtaaaattgatatcatcatcggcacccataaaattctgcagggt
gacctgcaattcaagaacctcgggttgctgattattgatgaagaacatcgctttggtgtg
cgtcacaaggaaaaactgaaatccctgcgctccgaagtcgatatactgaccctgactgct
actccgattcccagaaccctgaatatggcgatgtccggcattcgtgatctgtcgattatt
gccacgccaccagccaaacgtttgtcggtcaaaacttttgtgcgccaacacgatgatcag
ctaatcaaggaagcggttctgcgtgaactgctccgtggtggacaggtttactatctgcat
aatgaagtatccagcattgaaaaagccgctgaagacttacaatccctgatccccgaagcc
cgaattggtattggtcacggacagatgcgcgaacgggagctggaacaggtgatgtccgac
ttttaccataagcgctacaacattctggtgtgcaccaccattattgaaaccggtattgat
gtaccgagcgccaacaccattgttattcaccgggctgacaagtttggtctggcgcaactg
caccagctcagaggccgggtcggtcgttcccatcatcaggcttatgcctacctgatgaca
ccttcgcctaaatccatgaccaaagatgccaccaaacggctggatgccatttccgaagcc
caggatctcggcgccgggttcatgctggcgtccaacgacttggaaattcgtggcgcgggt
gaactgctgggcgaagaccagagcggtcagattcaaagtgttggctttacactgtatacc
gaaatgctggaaaaagcggtgaatgctatccgccgtggtgaaacacccaacctcgataag
cccctgcaacaaggaaccgaagtcaatttacgactccctgccctgttgccggaagattat
attcacgatgttcacaatcgactgattctttataagcgcatcgccgctgccaactcgaat
aacgatctgaaagcgctgcaggtggaattgatagaccgctttggtctgctaccggaacag
gccaagaacctgtttcgacaaacccgccttcgtctgacagccgaaaaactgggcattatc
aaactggatgctggcgaaggcagcattcgtattgagtttgaagaacagcccaagatcgac
ccgctggccatcatccagatgattcaggccgatccgcacctctacaaactggaaggaagc
agtgtcttcaagtacagtgcccctaatagtggagcgatggaacaacctgagcaacgtttt
gctggcgttgaaagtctgttgcagaggctggcaggttaa
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integrated database retrieval system
