Eubacterium maltosivorans: CPZ25_009220
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Entry
CPZ25_009220 CDS
T05996
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emt
Eubacterium maltosivorans
Pathway
emt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPZ25_009220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emt03400
]
CPZ25_009220 (mfd)
Enzymes [BR:
emt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPZ25_009220 (mfd)
DNA repair and recombination proteins [BR:
emt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPZ25_009220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
QCT71496
UniProt:
A0A4V1GLZ4
LinkDB
All DBs
Position
complement(1909330..1912752)
Genome browser
AA seq
1140 aa
AA seq
DB search
MDRLFNDLKGTPKIEKIFEAIEESIGVNLSNVKTGLKGFLTLLTYEHFDTNVLFITHSDR
DAQKKAEILRKFRDTDVLYYPLEPVHDYFSDAHSQDIAHQRMTVIEKLFSGKKYIIVASI
DSILKKMVSREAMEALFFSINNGDTFDLEALVVKLVSLGYERVYQVESKGQFALRGGILD
IYNVTSDDAVRIEFFDDEVDAMRLFDVDSQLSYNQIENVRIAPAKEIVLSEEERQKIFKM
IHKKYDGNELYMELVEKLEQEGAQYDETLFTFIKENDSFMDYVGKNIVIWDEYTRIKETY
DIFIKKTWLDYESLITQGYILPEEKNKFFTFHYVEKSLENCPSVKEYLFNSRAKKGMNLD
MNSRDLESFSGQFPLFLDFLNRRLTLGYRIHICCKTEKTRETVKQYLIDQEIFNFVENEG
PGVQLSVGEISEGFEMEDEKVVYINESEIFKEKRVSQRKKKHKGRKIDSFAELHVGDYVV
HDVHGIGIYRGIEQLTIDNVTKDLMVIEYAGDAKLYIPVEQMDSVQVYIGTGGDKKPKVN
QMGNPDWQKAKNKAQKAVEDMADELIALYAKRRSMKGYAFSPDTSWQKEFEDDFPYVETE
DQLRCVEEIKADMESEIPMDRLLCGDVGYGKTEVALRAAFKAIMEGKQVAMLVPTTILAQ
QHYNTVLDRFRKYPISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLLSQDVHFKDL
GLLIIDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMSVIEEPPEGR
RPVQTYVMAYNPLIIQDAINRELGRGGQVYYVHNRVHDIHEVAIDVQSLVPDARIVVAHG
RMSGSELEDIMVDFLNHDFDILVTTTIVESGLDVKNANTMIIDEGDHFGLSQLYQLRGRV
GRSDVQAYTYVTHKKEILTEIAQKRLKAIKDFTAFGSGFKVAMRDLEIRGAGNILGAEQS
GHLFKIGYELYCRILEEAISKRMDGVEVETEEPIRINLDIDGYIPERYISSEELKYDIYK
KLTFIKTIEDYDDFEEELLDRFGDIPNGVYNLMAIAMIKNMASAIGVKEIKQKGQFIYLT
FSEKKEVFVPEAEKMPELIRKYKVKFKAGKANEACWSFNLSSVKDKDILKEIISFFEDLK
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggatcgactgtttaatgacttaaaaggaacacctaaaatcgaaaaaatatttgaagcc
attgaagaatccataggggttaatctctcaaatgtcaagactggcctaaaaggtttttta
acgcttttgacctatgaacattttgatacgaatgttttgtttatcacccattccgataga
gatgctcaaaaaaaggctgaaattctgagaaagttcagagatactgatgtgttatactat
cctctggagccggttcatgattatttttcggatgctcatagccaggatattgctcatcag
cgtatgaccgtgattgaaaagctgttttcgggaaaaaaatatattatcgtagcatcaatt
gacagcattttgaaaaaaatggtttccagggaagccatggaagcgctgtttttttcaatt
aacaatggtgatacctttgatttggaagcattggttgtaaagcttgtgagcttgggctac
gaaagagtttatcaggtagagtcgaagggacaatttgcgctgcgtggtggaattttagac
atctacaacgtaacctctgatgatgctgtccgtattgagttttttgatgatgaagtggac
gcaatgcgtctttttgatgttgacagtcagctgtcatataatcagatcgaaaatgttcgc
atagcgcctgcaaaggaaatcgttttgtctgaggaagagcggcagaaaatttttaaaatg
atccataaaaaatatgatggaaacgagctttatatggagcttgttgaaaagcttgagcag
gaaggcgcccaatatgacgaaactttgtttacctttattaaggaaaacgactcctttatg
gattatgtgggaaaaaatattgttatctgggatgagtatacgcgaatcaaagaaacctat
gatatctttattaaaaagacatggctggattatgagtcgctcataacgcaaggatacatt
ttgcctgaggaaaaaaataagttttttactttccattatgttgaaaagagccttgaaaac
tgtccttcggttaaagagtatctttttaacagcagagcaaaaaagggaatgaatctggat
atgaattcccgcgatcttgaaagcttttcgggccagtttccattatttttagactttttg
aaccgccgtcttaccttgggataccggattcacatctgctgtaaaactgagaagacccgt
gaaacagtcaagcaatacctgatagatcaggagatctttaattttgttgagaatgaaggg
ccaggtgtacagctttcagtcggcgaaatttctgaaggctttgagatggaagacgaaaaa
gttgtctatattaacgagtctgagatctttaaagaaaaacgtgtttcccagagaaagaaa
aaacacaagggaagaaagattgactcctttgctgagttacatgtaggagattatgttgtt
catgatgtgcatggtattgggatataccgtgggattgagcaactgacgattgataatgta
accaaagatctgatggtcatcgagtatgccggagatgccaagctttatattccagtagaa
cagatggattcagtccaggtctatattggtacgggcggcgataaaaaaccaaaggttaac
cagatgggaaatcccgactggcagaaggctaaaaataaagctcaaaaagcagtcgaagat
atggccgacgagctcatcgcgctgtatgctaaaagacgttcgatgaagggatacgctttt
agtccagatacatcgtggcaaaaagagtttgaggacgattttccttatgttgaaacggaa
gaccagctgcgctgtgttgaagagattaaggcggatatggaatcagaaataccaatggat
cgtcttttatgcggtgatgttgggtatggaaagacagaggtagccctgcgggcggctttt
aaagccatcatggaaggaaaacaagtagcaatgctggttccaacgacgattttggcacaa
cagcattacaatactgttttagaccgatttcggaaataccctatcagtgtagaggtgatc
agtcgtttcaggacctctggacagcaaaagaaaattttaggagatctggcacttggcaag
ctggatatgattatcggcacacaccgcctgttatcccaggatgttcattttaaagacctg
gggctgcttattatcgatgaggagcagcgctttggggtgcggtctaaagaaaaaataaaa
cagttgaaacagaatgtcgatgttttgaccttaagtgcaaccccgatcccgcgtacatta
catatgtcgatgacgggtgtacgcgatatgagtgttattgaagagcctccagaaggaaga
cggccggttcaaacttatgttatggcttataatccgctgattatccaggatgccatcaat
cgtgagcttggtcgcggaggacaggtttactatgtccataatcgtgttcacgatatccat
gaggttgccattgatgtccagagtctcgtaccagacgcgagaattgtagtggcgcatggc
cggatgagcggcagtgagctggaggatataatggttgattttttaaatcatgactttgat
atcctggtgacaacgaccattgttgagtctgggttagatgtcaaaaatgccaataccatg
attatagatgagggagatcatttcggactttcccagctctatcagctgagagggcgtgtc
ggaagatctgatgttcaggcctatacttacgttacccataaaaaagaaattctgactgaa
attgcacaaaagcgtttaaaagccatcaaggattttacagcctttgggtcaggctttaag
gtggctatgcgcgaccttgaaattcgtggggcaggtaatattttgggtgcagaacagtcg
ggacatctatttaagattggttatgagctgtactgccgtattttggaagaggcgatcagt
aaacgcatggacggcgtagaagtagaaactgaagagccgattcgtatcaatttagatatt
gacggctatattcctgaacgctatatcagcagtgaagagctgaaatatgatatttataaa
aaacttacatttattaagacaattgaggattatgatgattttgaagaagagctccttgat
cgttttggtgatataccaaatggcgtttacaatctgatggccattgctatgattaaaaat
atggcttctgccatcggagtcaaagagatcaaacaaaagggacagtttatctatttgacc
tttagtgagaagaaggaagtctttgtgcctgaggctgaaaaaatgccggagttaatccgt
aaatataaagtgaaatttaaagcaggaaaagccaatgaagcgtgctggagctttaatttg
tcatcggtcaaagataaagatattttaaaagaaattatttcattttttgaggatttaaaa
taa
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