Sinorhizobium mexicanum: FKV68_09490
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Entry
FKV68_09490 CDS
T06706
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emx
Sinorhizobium mexicanum
Pathway
emx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FKV68_09490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emx03400
]
FKV68_09490 (mfd)
Enzymes [BR:
emx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FKV68_09490 (mfd)
DNA repair and recombination proteins [BR:
emx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FKV68_09490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
DUF2067
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QLL61661
UniProt:
A0A859QSU9
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All DBs
Position
1982953..1986462
Genome browser
AA seq
1169 aa
AA seq
DB search
MISGLDPKKILSATREVTIGPVPSGAEALILAELARAGSPVAYILSDGQRIADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRAKPHAAIVLVTVNAALQK
ISPQDVIESLAFSARPGNQVRMDDIAARLERNGFERVPTVREVGEFAVRGGILDVYVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDGLETVFDYLDGFRIVTDHLVREAAAERSKL
ILDYYDARLASASPGKSQISQGTPYKPVPPELLYLSAKGFGAMLSERSAVRLSPFNEHEG
EARQVVAIEARQGLRWAKAAGEVESDGERANVFDQAVKHIAERRAQGAKVVISGWTEGSL
DRLLQVLTEHGLANIRPIKALSDVRSLKPGEAASAVLSLETGFETGDLVVIGEQDILGDR
MVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYAEG
AKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RHAPVLAAQDGVYDEFAARFPYDETEDQMNSIDAVRDDLGSGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPVRIQQASRLVGSKDLALTKK
EVADGKTDIVVGTHALLGSSVKFANLGLLIVDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGW
SPQISVGTPVMIPEDYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIF
FQRELATAEKRLWGAATVMTQLAGLARPA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatatctggtcttgacccgaagaagatcctttctgccacacgggaggtaacgatcggc
ccggtgccgtccggcgccgaagccctgatccttgccgagttggcgcgagcggggagcccc
gtcgcttatatcctttccgatggtcagcggattgcggaccttgagcaggttctcggcttc
gtggccccggacattccggttctcaccctgccgggctgggattgcctcccctacgaccgt
gtttccccgagtgcggacacctccgcgcggaggctggccgccttgagcgcgttgatcgcg
caccgggcgaaaccgcatgcggcgatcgtgctggtcaccgtcaacgcggccctccagaag
atctcgccgcaggacgtgatcgagagcctcgctttttcggcgaggccgggcaaccaggtc
cggatggacgatatcgcggcgcggctggagcgaaacggcttcgagcgcgtgccgactgtg
cgcgaggtcggcgagttcgccgtccgaggtggcattctcgatgtttatgtgcccggcagc
ggcgaaccgttgcgcctggatttcttcggcgacacgcttgagacgatccgctccttcgat
ccggcgagccagcgcacgaccggccaggtgcgctcactcgatctcaacccgatgagcgaa
gtgtcgctgacgccggaaacgatcagccatttccgcaagcaatatttgtcactcttcggt
gccgcgacgcgggacgacgcgctctaccaggcggtatcagaagggcgccgctacgccggc
atggagcattggctgccgcttttctatgacggcctggagacagtcttcgattatctcgac
ggtttccgcatcgtcacggatcatctggtgcgcgaagcggcggcggagcggtcgaagctc
atcctcgattactatgatgcccgccttgcctcggcatcaccgggcaagagccagatctcc
caaggcacaccctacaagccggtgccgccggaactgctttacctcagcgccaagggtttt
ggcgcgatgctctctgaacgcagcgccgtccgcctgtcgccatttaacgagcatgaaggt
gaagcgcgacaggtcgtcgccatcgaagcgcgtcagggactgcgttgggcaaaggcggcg
ggtgaggtcgagagtgacggcgaacgcgcgaatgtcttcgatcaagccgtgaagcacatc
gccgaaagacgagcgcagggcgcgaaggtcgtgatctcggggtggacggaaggatcgctc
gatcgcctcttgcaggttctcaccgagcacgggctcgcaaacattcgtcctatcaaggct
ttgtccgatgttcgctcgctgaagccgggcgaggcggcctccgccgtcctcagcctcgaa
accggattcgagactggcgatctcgtggtcatcggcgagcaggacatccttggcgaccga
atggtgcgccgatcgaagcgtcgcaagcgcggcgccgacttcatcgccgaggtgacaggc
ctcgacgagggcagctatgtcgtccacgctgagcacggtatcggccgtttcgttggcttg
cgcacgatcgaggcggccggcgccccgcacgattgtctcgaactcgtctatgcggagggt
gccaagctctttctgccggtcgagaacatcgagcttctgtcgcgttatggctccgaaggc
acggatgcaatccttgacaagctcggtggcgtcgcgtggcaggcgcgcaaggcgaagctc
aagaagcggctgctcgatatggccggaggcctgatccgcatcgctgctgaacggcatacg
cgccacgcgcctgttctggccgctcaggacggggtctatgacgagttcgccgcgcgcttc
ccctacgatgaaaccgaggaccagatgaactcgatcgacgccgtgcgcgacgatcttgga
agcggtcgcccgatggaccgcctggtctgcggtgatgtcggcttcggcaagaccgaggta
gcgctgcgtgccgcgttcatcgccgcaatgaatggcgtgcaggtcgcagtcgtggttccg
acgactttgcttgcccgacagcatttcaggacgttcagtgagcggttccgcggtctgccg
gtccgcatccaacaggcctcgcggctcgtcggctcgaaagacctcgcgttgacgaagaag
gaagtggccgacggcaagaccgacatcgtcgtcggcacgcacgcgctgctcggctcctcg
gtcaagtttgccaatctcggcctgttgatcgtcgacgaagagcagcacttcggcgtcaaa
cacaaggagcggctcaaggagctgaaatccgacgtgcatgtgctgaccctgtcggcgacg
cctattccgcgcacgctgcaacttgccttgaccggcgtccgcgaattgtcgttgattacg
acgccaccggtcgaccgcatggcggtgcgcaccttcatctcgcccttcgacgcgctggtg
atccgcgagacactgatgcgcgagcattatcgcggcggccagagcttttatgtctgcccg
cggttgagcgacctttcggagatccacgattttctgaaatccgatgttccggaactgaag
gtcgcggtggcgcacggacagatgccggctaccgaactcgaagacatcatgaacgctttc
tatgaaggacgttacgacgtgcttctctcgacgacgatcgtcgaatcgggcctcgatgtg
ccaaccgccaataccctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctac
cagcttcgcggccgggtaggccggtccaaggtccgcgcctttgcactcttcaccttgccg
gtcaacaagactttgacagggccggcagagcgccgcctgaaagtcctgcaatcgctcgac
acgctgggagccggctttcagctcgccagccacgatctcgatatccgcggcgccggcaac
ctgctcggcgaggaacaatccggccacatcaaggaagtcggcttcgagctttaccagcaa
atgttggaagaggccgttgccgagctcaagggcgaggaggaaatccacgacaccggctgg
tcgccgcagatatcggtcgggacgccggtcatgataccggaagactacgtgccggacctg
aacctgaggctcggactctaccgccgccttggcgagttgacggacctcaaggagatcgac
ggtttcggtgcggaactgatcgatcgcttcgggccgctgccgactgaggttcagcatctc
ctgaagatcgtctacatcaagtcgctgtgccgcacggcaaatgtcgaaaagctcgatgcc
gggccgaaaggtgtggttgttcagttccgcaacaaggagtttccgaaccccgccgctctc
gtcggttatatcgccaaacagggaaccgtggcgaagatccgcccggaccagagcatcttc
ttccaacgcgaacttgcgacggcggagaagagactttggggagcagcaacggtgatgacg
cagctcgccgggctcgcgaggcccgcctaa
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