Endosymbiont of unidentified scaly snail isolate Monju: EBS_1561
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Entry
EBS_1561 CDS
T04530
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enm
Endosymbiont of unidentified scaly snail isolate Monju
Pathway
enm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EBS_1561 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enm03400
]
EBS_1561 (mfd)
Enzymes [BR:
enm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EBS_1561 (mfd)
DNA repair and recombination proteins [BR:
enm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EBS_1561 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAN69445
UniProt:
S6CGH6
LinkDB
All DBs
Position
1686178..1689603
Genome browser
AA seq
1141 aa
AA seq
DB search
MPETTEARHWGRANGAALSLALAGAARDAGRPLLVITPDPQGAQRLLEELRFFLGSDGPE
AFLFPDWETLPYDAFSPLPELVSQRLETLHHLREMQQGIVIAPVATVMQRLLPEDFLDAH
SLHLAVGDRLDFDAFRRRLEQAGYEPVSQVMGHGEFAVRGSLIDLFPMGSELPLRIDLFD
DEIDSIRTFDADTQRTLEKIDRFAMLPAREFPVDEQAINRFRRAWRETFPGDPQRSLIYR
EVSEGHLPGGIEYYLPLFFERTATLFDYLPESTLVVHEQALNDTAGEFAEQVTQRYEQRR
HDIERPLLSPEALWLSPEALEQAIANHPRIAHQPFEAEDGDNLAARLLPPLALQARAAEP
AAALHGFLEQHRGRVLFVAETAGRREALRDTLRDLHIVVHAVDGWQAFLDAEDPLCLTAA
PIETGLWLEDPELAVIPEALLLGERVRQRRRARRGPDAELVVRNLAELQIGAPVVHEEHG
VGRYLGLQTLDTGGMAQEYLVLEYARGDKLYVPVGALHRISRYTGASPENAPLHRLGSDQ
WEKARRRAAEKVRDVAAELLDIYARRAAREGTALPPPGEEYRQFAAQFEFEETPDQAAAI
TAVIEDMTSPRPMDRLVCGDVGFGKTEVAMRAAFMAAHNGRQVAVLLPTTLLAQQHFQNF
ADRFADWPIRVAGLSRFRSKKETDAILEGLADGTIDIVVGTHKLLGEEIRFKDLGLVIVD
EEHRFGVRHKERLKALRAEVDMLTLTATPIPRTLNMAMSGMRDLFIIATPPAARHPIKTF
VTQWNDAQITEAIQRELARGGQVYFLHNEVESIEKMATKVQELVPSARLEVAHGQMRERE
LERIMRDFYHQRFNILVCTTIVESGIDVPSANTIVINRADRLGLAQLHQLRGRVGRSHHR
AYAYLITPPPRAMTADARKRLEAIEALEDLGAGFSLATHDLEIRGAGELLGDEQSGQIHE
VGFTLYTEMLEQAVKAIREGRDPALEKPLDHGAEIDLHIPALLPEEYIPDVHTRLIQYKR
IASAESPEALRELKVEMIDRFGLLPEPAQRLFDLTELKLAIRDLGIRKVDVGPQGGRILF
APEPKIDAARLIELIQTRPQEFKLDGPDKLRFFADMSEPETRIGTTAAILQQLAPSPAGG
D
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgagaccaccgaagcccgccactggggtcgcgccaacggtgccgcactgagcctg
gcgctggccggtgccgcgcgcgacgctggccgccccctgctggtgatcacccccgacccc
cagggcgcgcagcgcctgctcgaggaactgcgtttcttcctgggcagcgacggccccgag
gccttcctgtttccggactgggagaccctgccctacgacgcgttctcgccactgcccgag
ctggtctcgcagcgcctcgagaccctgcaccacctgcgcgagatgcagcaaggtatcgtc
atcgccccggtggccacggtgatgcagcgcctgctgcccgaggactttctcgacgcccac
agcctgcacctggccgtcggtgaccggctcgacttcgacgccttccgccggcgcctggaa
caggcgggctacgagccggtctcccaggtgatgggccatggcgagttcgcggtgcgcggc
tcgctgatcgacctcttccccatgggcagcgagctgccgctgcgcatcgacctgttcgac
gacgagatcgactccatccgcaccttcgatgccgatacccaacgcaccctggagaagatc
gaccgcttcgccatgctgccggcgcgcgaattcccggtggacgagcaggccatcaaccgc
ttccgccgcgcctggcgcgagacctttcccggcgacccgcagcgcagcctgatctaccgc
gaggtgagcgagggccatctgcccggcggcatcgagtactatctgccgctgttcttcgag
cgcaccgccaccctgttcgactacctgcccgagtccaccctggtggtgcacgaacaggcg
ttgaacgacaccgccggcgaatttgccgagcaggtgacacaacgctacgaacagcgccgg
cacgacatcgaacggccgctgctgtctcccgaggcactctggctctcgcccgaggcgctc
gagcaggcgatcgccaaccacccccgcatcgcccaccagcccttcgaggccgaggacggc
gacaacctggccgcccgcctcctgccaccgctggcgctgcaggcgcgtgccgccgaaccg
gccgccgcattgcacggcttcctcgagcagcatcgcgggcgcgtgctgttcgtggccgag
accgccggccgccgcgaggccctgcgcgacaccctgcgcgacctgcacatcgtggtgcac
gcggtggacggctggcaggcattcctggatgccgaagaccccctgtgcctgaccgccgct
ccgatcgagaccggcctgtggctggaagacccggagctggcggtgatccccgaggccctg
ttgctgggcgagcgggtgcgccagcggcggcgcgcgcgccgtggccccgatgccgagctg
gtggtgcgcaacctggccgagctgcagatcggcgccccggtggtacacgaggagcacggg
gtgggtcgctacctgggcctgcagacgctggacaccggcggcatggcgcaggaatacctg
gtgctcgaatatgcgcgtggcgacaagctgtacgtgccggtcggcgccctgcaccgcatc
tcgcgctataccggcgcctcgccggagaacgcgccgctgcaccgcctcggctccgatcag
tgggagaaggcccgtcgccgcgccgccgagaaggtacgcgacgtggccgccgaactgctc
gacatctatgcccgccgggccgcccgcgagggcaccgccttgccaccgccgggcgaggaa
taccgccagttcgccgcccagttcgagttcgaggagacccccgaccaggccgccgccatc
accgcggtgatcgaggacatgacctcaccacgccccatggaccgcctggtgtgcggcgac
gtcggcttcggcaagaccgaggtcgccatgcgcgccgccttcatggccgcgcacaatggc
cgccaggtcgcggtgctgctacccaccaccctgctcgcccaacagcacttccagaacttc
gccgaccgcttcgccgactggccgatccgggtcgccgggctgtcacgcttccgctcgaag
aaggaaaccgacgccatcctcgaagggctggccgacggcaccatcgacattgtggtcggc
acccacaagctgctgggcgaggagatccgtttcaaggacctgggactggtcatcgtcgac
gaggaacaccgcttcggcgtgcgccacaaggaacgcctcaaggccctgcgcgccgaggtg
gacatgctcacgctcaccgccacgcccatcccccgcaccctcaatatggccatgtcgggc
atgcgcgacctgttcatcatcgccaccccgccggccgcgcggcaccccatcaagaccttc
gtcacccagtggaacgacgcacagatcaccgaggccatccagcgcgaactggcacgcggc
ggccaggtgtacttcctgcacaacgaggtcgagagcatcgagaaaatggccaccaaggtg
caggaactggtgccctcggcgcgcctagaggtcgcccacgggcagatgcgcgagcgcgag
ctggagcgcatcatgcgcgacttctatcaccagcgcttcaacatcctggtgtgcaccacc
atcgtcgagtcgggcatcgacgtgcccagcgcgaacaccattgtcatcaaccgcgccgac
cgcctcggcctggcccagctgcaccagctgcgcggccgggtcgggcgttcgcaccaccgc
gcctacgcctacctgatcaccccgccgccacgcgccatgaccgcggacgcgcgcaagcgg
ctcgaggccatcgaggcgctggaagacctgggcgcgggcttcagcctggctacccacgac
ctggagatccgcggcgccggcgagctgctgggcgacgagcagagcggccagatccacgaa
gtcggcttcaccctctataccgagatgctcgagcaggcggtcaaggccatccgcgaaggc
cgcgacccggcgctggagaaaccgctggaccatggtgccgagatcgacctgcacatcccc
gccctgctgcccgaggagtatatccccgacgtacacacccggctgatccagtacaagcgg
atcgcctcggccgaatctcccgaggcgctgcgcgagctgaaggtggagatgatcgaccgc
ttcggcctgctgcccgaaccggcacagcgcctgttcgacctcaccgagctgaaactggcc
atccgcgacctgggcatccgcaaggtcgatgtcggtccccagggcggacgcatcctgttc
gcgccggaaccgaagatcgacgccgcgcgcctgatcgaactgatccagacccggccacag
gaattcaagctggatggcccggacaaactgcgcttcttcgccgacatgagcgaacccgag
acccgcatcggcaccactgccgccatattgcaacagctcgccccctcgccagccggcggc
gattga
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