Ensifer sp. PDNC004: JVX98_13650
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Entry
JVX98_13650 CDS
T09472
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JVX98_13650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enp03400
]
JVX98_13650 (mfd)
Enzymes [BR:
enp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVX98_13650 (mfd)
DNA repair and recombination proteins [BR:
enp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JVX98_13650 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
UB2H
AAA_22
SSB
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QRY69256
LinkDB
All DBs
Position
complement(1112928..1116431)
Genome browser
AA seq
1167 aa
AA seq
DB search
MLAGLDPKKIVEAQREITIGPVPSGAEALILAELARAGQPVAYILSDGQRIADLEQVLSF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHKKKPHAAIVLVTVNAALQK
ISPQDVIQSLAFSARPGNQVRMDDIALRLERNGFERVATVREVGEYAVRGGILDVFVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKHYLSLFG
ATTRDDALYQAVSEGRRYAGMEHWLPLFYDGLETVFDYLDGFRIVTDHLAREAAAERSKL
ILDYYDARLASASPGKAQATQGTPYKPVPPELLYLSAHGFNAGLSSRDAIRLSPFNEHEG
EARQVISVDARQGMRWAKSAGEGEAESERVNVFDQAVKYIAERRSKGAKVVISGWSEGSL
DRLLQVLAEHGLGNVKPIKALAEVKSLKPGEAAAAVLSIEAGFETGDLVIIGEQDILGDR
MVRRSKRRKRGADFIAEVAGLDEGSYVVHAEHGIGRFVGLRTIEAVGAPHDCLELVYADD
AKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RRAPVLAAQDGVYDEFAARFPYDETEDQLNSIEAVREDLGSGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPIRIQQASRLVGSKELALTKK
EVADGKTDVVVGTHALLGTSVNFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYDGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGMAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGW
SPQISVGTPVMIPEHYVPDLHLRLGLYRRLGELTDLKEIDGFGAEMIDRFGPLPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTLSKIRPDQSIF
FQRELPTPEKRLSGAAMVMTQLAGLAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgctggctggccttgatccgaagaagattgtcgaagcacagcgagagatcacgatcggg
ccggtcccttccggtgccgaggcgctgatcctcgccgagttggcccgtgcaggccagccg
gtcgcctacattctttcggacggccagcggatcgccgatctggaacaggtcctctcattc
gtcgcgcccgacattccggtgctgacgcttcccggttgggactgccttccctatgaccgc
gtctcgccgagcgccgacacctcggcacggcggctggcggcgctgagtgccttgattgcg
cacaagaagaagccgcatgcggcgatcgtgctggtcacggtcaacgccgcgctccagaag
atctcaccgcaggacgtgatccagagcctggcgttctcggctcgtccgggcaatcaggtg
cgcatggacgacatcgcgctgcggctggagcgcaacggcttcgagcgcgttgcgaccgtg
cgcgaggttggcgaatacgcggtgcgtggtggcatcctcgatgtcttcgtgcccggaagc
ggcgagccgctgcgcctcgatttcttcggcgacacactcgaaaccatccgctccttcgat
ccggcaagccagcgcaccaccggtcaggtccgctccctcgatctcaatcctatgagcgag
gtgtcgctgacgcccgaaacgatcagccacttccgcaagcactacctatcgctgttcggt
gcgacgacccgcgacgacgcgctttaccaggctgtctccgaaggccggcgttatgccggc
atggagcattggctgccgctgttctatgacgggctggagacggtcttcgactatctcgac
ggcttccgtatcgtcaccgatcatctggcgcgcgaggccgcggccgagcgctcgaagctc
attctcgactattatgacgcccgtctggcctcggcgtctccgggcaaggcgcaggccacc
cagggcacgccctacaagcccgttccgccggaactgctttatctgagcgcgcatggcttc
aacgccggcctgagctcacgcgatgccattcgcctctcgcccttcaacgagcacgagggc
gaggcccgccaggtgatctcggtcgatgcgcgccagggcatgcgctgggcgaagtcggcg
ggcgagggcgaagccgaaagcgaacgcgtcaacgtcttcgatcaggcggtcaaatacatc
gccgagcggcgctcgaagggtgccaaggtagtgatctcaggctggagcgaaggctcgctc
gaccgcctgctccaggtgcttgccgaacacggtctcggcaacgtcaagccgatcaaggcg
ctcgccgaggtcaagtcgctgaagccgggtgaagcggccgcggccgtgctcagtatcgag
gccggattcgagacgggtgatctcgtcatcatcggcgagcaggacatcctgggcgaccgc
atggtccgccgctcgaagcggcgcaagcgcggtgccgacttcatcgccgaagtcgcaggc
ctcgacgagggcagctatgtcgtgcacgccgaacacggcatcggccgtttcgtcggcctg
cgcaccattgaggcggtcggcgcgccccatgattgcctcgagctcgtctatgccgacgat
gccaagctgttcctgccggtcgaaaacatcgagcttctgtcgcgctacggctcggaaggt
accgatgcgatcctcgacaagctcggcggcgttgcctggcaggcgcgcaaggccaagctc
aagaagcggctgctcgatatggccggcggcctgatccgcatcgctgccgaacgccatacg
cgccgcgcgccggtgctggccgcgcaggacggcgtctatgacgagtttgccgcccgcttc
ccctatgacgagaccgaagaccagctgaactcgatcgaggccgtgcgcgaagacctcggc
agcggccgtccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtg
gcgttgcgcgcagccttcattgccgccatgaacggcgtgcaggtggcggtcgtcgtgccg
acgacgctgcttgcccgccagcatttcaagacattttccgaacgcttccgcggcctgccg
atccgcatccaacaggcatcccgtctcgtcggctccaaggaactggcgctgacgaagaag
gaagtggccgatggcaagaccgatgtcgtcgtcggcacccacgcgctcctcggcacgtcg
gtcaactttgccaatctcggcctcttgatcatcgacgaagagcagcacttcggcgtcaag
cacaaggagcggctgaaggaactgaagtcggacgtccacgtcttgacgctttcggcaacg
ccgatcccgcgcacgctgcaactggcgctgacgggtgtccgcgaactgtcgctgatcacc
acgccgccggtcgaccgcatggcggtgcgcaccttcatctcgcctttcgacgcgctggtg
atccgcgaaacgctgatgcgcgagcactatcgcggcggccagagcttctatgtctgcccg
cgcttgagtgacctgtccgaaatccatgatttcctgaagtcggacgttccggagctgaag
gtggcggttgcccacggccagatgccggcaaccgagctcgaagacatcatgaacgctttt
tatgacgggcgttacgatgtgcttctttcgacgacgatcgtcgaatccggtctcgacgtg
ccgacggccaacacgctgatcgtacaccgcgccgatatgttcggtcttgcccagctctac
cagcttcgcggccgcgtcggccgctcgaaggtgcgcgccttcgcgctgttcacgctgccg
gtcaacaagacgctgacgggtatggcagagcgccggctgaaggtgctgcaatcgctggat
acgcttggcgccggcttccagctggcgagccacgacctcgatatccgcggcgccggaaac
ctgctgggcgaagaacagtcgggccatatcaaggaagtcggcttcgagctttaccagcag
atgctcgaggaagcggtcgccgaactcaagggcgaggaagagatccacgacaccggctgg
tcgccgcagatttcggtcggaacgccggtcatgatcccggaacactacgtgccggacctg
catctgaggctcggtctctatcgccgcctcggcgaactgacggacctcaaggagatcgac
ggtttcggcgccgagatgatcgaccgcttcggcccgctgccgatcgaggtccagcacctg
ttgaagatcgtctacatcaagtcgctctgccgcacggcaaatgtcgagaagctcgatgcc
ggcccgaagggcgtcgtcgtgcagttccgcaacaaggaattcccgaacccggcggcactc
gtcggctacatcgctaagcagggcacgctttcgaagatccggcccgaccaaagcatcttc
ttccagcgcgaactgccaacaccggaaaagcgcctgtcgggtgcagcaatggtgatgacc
cagctcgccggcctggcgaagtaa
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