Enterobacter sp. DSM 30060: HWQ15_10595
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Entry
HWQ15_10595 CDS
T07983
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ens
Enterobacter sp. DSM 30060
Pathway
ens03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ens00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ15_10595 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ens03019
]
HWQ15_10595 (rnr)
03016 Transfer RNA biogenesis [BR:
ens03016
]
HWQ15_10595 (rnr)
Enzymes [BR:
ens01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HWQ15_10595 (rnr)
Messenger RNA biogenesis [BR:
ens03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWQ15_10595 (rnr)
Transfer RNA biogenesis [BR:
ens03016
]
Prokaryotic type
tRNA degradation factors
HWQ15_10595 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
QLA02495
LinkDB
All DBs
Position
2222694..2225135
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEDQIENLREEVPEESKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAVTSFRSVLAELGLELPGGNKPEPRVYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAHEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTEREKAKKGGNGKAGGKRRQAGKRVNFEPDSAFRGEKQQKPKAA
KKDARKAKKPSTKTQKIAAATKAKRAAKKQQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgagggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gccatggagcgcgacggccagctggtctttactcgtcgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaaggcaccgttattggtcatcgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgacctgtacctctcatccgaacagatgaagatgtgtattcac
ggcgaccagatcctggcgcagccgctgggtgcagatcgtaaaggccgccgcgaagcgcgc
gtggtccgcgtgctggtgccgaaaaccagccagattgtaggccgttactttaccgatgcg
ggcgtaggctttgtggtgccggacgacagccgtctgagcttcgacattctcatcccgcct
gaagaggtgatgggcgcacgcatgggctttgtggtagtggttgaacttacccagcgcccg
acccgccgtaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataacatgggcacc
ggcatggccgttgatatggcgctgcgcacccatgaaattccttacgtctggccgaaagcg
gttgaagaccagatcgaaaacctgcgtgaagaagtgccggaagagtccaaagcaggccgc
gtggatctgcgcgatctgccgctggtcaccattgatggtgaagacgcccgcgacttcgat
gatgccgtgtactgtgagaaaaaacgcggtggtggctggcgtctgtgggtggctatcgcg
gatgtgagttattacgtacgtccacacacgccgctggataacgaagcgcgcagccgcggt
acgtcggtctacttcccgtcgcaggttgtaccgatgctgccagaagtgctctctaacggc
ctgtgttccctcaacccgcaggtggaccgcctgtgtatggtctgcgaaatgaccatctcc
agcaagggacgtctgacgggctataagttctacgaagcggtgatgagttctcatgcgcgc
ctgacctataccaaggtctggcatatgttgcagggcgatcaggatcttcgcgaacagtac
gcgccgctggtcaaacacatcgaagagctgcacaacctctacaaaacgctggatcaggcg
cgcgaagagcgcggtgggatctcgtttgagagtgaagaagcgaaattcatctttaacgct
gagcgtcgtatcgagcgaatcgagcagactcagcgtaacgatgcgcacaagctgattgaa
gagtgtatgatcctggcgaacatctcggcggcacgtttcgttgagaaagccaaagagcct
gctctgttccgtattcacgataagccaaccacagaagccgtaacctcgttccgttccgtg
ctggccgaactcggcctggaactgcctggcggcaataagcctgagccacgcgtttatgcc
gagctgctggaatccatcagcgatcgtcctgacgcggaaatgctgcaaaccatgctgctg
cgttccatgaagcaggcgatttacgatccggaaaaccggggccactttggtctggcgtta
cagtcgtatgcgcactttacctcgccgattcgccgttatccggatctgtccctgcaccgt
gcgatcaagtatctgctggcgcacgagcagggtcacaaaggcaatacgaccgaaaccggt
gggtatcactactccatggaagagatgctgcaactgggccagcactgttccatgaccgag
cgtcgtgcggatgaagcaacgcgcgacgtggcggactggctgaagtgtgactttatgctg
gatcaggtgggtaacgtctttaaaggtgtgattgccagtgtcaccggctttggcttcttc
gtacgtctggatgagctgtttatcgacggtctggtgcacgtttccagccttgataacgat
tactaccgcttcgaccaggtcggacaacgtctgatcggtgaatccggcggtcagacctac
cgtctgggcgatcgggtggaagtgaaggtagaagccgtgaatatggacgaccgtaaaatc
gacttcagcctcatctccagcgaacgtgctccgcgtaacgtcgggaaaaccgagcgtgag
aaagcgaaaaaaggcggcaacggtaaagcgggcggcaagcgacgtcaggcaggtaaaaga
gtaaactttgagccagacagcgccttccgtggcgagaagcagcagaagcccaaggcggcg
aaaaaagacgctcgtaaagcgaaaaaaccgtcgaccaagacccaaaaaatagcggccgca
accaaagcgaagcgcgcggcgaagaaacagcaggcggagtaa
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