Enterobacter sp. 638: Ent638_0362
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Entry
Ent638_0362 CDS
T00507
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ent
Enterobacter sp. 638
Pathway
ent03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ent00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ent638_0362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ent03019
]
Ent638_0362
03016 Transfer RNA biogenesis [BR:
ent03016
]
Ent638_0362
Enzymes [BR:
ent01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ent638_0362
Messenger RNA biogenesis [BR:
ent03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ent638_0362
Transfer RNA biogenesis [BR:
ent03016
]
Prokaryotic type
tRNA degradation factors
Ent638_0362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ABP59050
UniProt:
A0A9J9GE36
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All DBs
Position
413969..416443
Genome browser
AA seq
824 aa
AA seq
DB search
MSHDPFQDREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKNSQIVGRYFTDAGVGFVVPDDSRMSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTSMAVDMALRTHEIPYVWPHA
VEEQVKDLNEQVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPNTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKTLEQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGSKPEPRDYAELLTAIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLVAQEQGHKGNTTETG
GYHYSMEEVLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLNELFIDGLVHVSSLDNDYYRYDQVGQRLTGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTARESAKKGSGGKSNGKRRQAGKKVNFEPDSAFRGDKGKAAPKQ
PKAPQSPKAKAEKAEKGAKKPSAKTQKIAAATKAKRAAKKKIAE
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaccgcgaagcagaaaagtacgcgaatcctatcccaagc
cgcgagttcatcatcgaacacttaaccaagcgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaatattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gccatggagcgtgacggtcagttggtctttacccgtcgtcagtgctatgcgttgccagaa
cgtctggacctgctgaaaggcatcgttatcggtcaccgcgatggttacggtttcctgcgc
gtcgaagggcgtaaagacgatctgtacctgtcatctgaacagatgaaaatgtgcatccat
ggcgaccagattttggcgcagccgctgggggccgatcgtaaaggccgtcgtgaagcgcgc
gtggtgcgtgtgctggtacctaaaaacagccagattgtcggtcgttactttaccgatgcc
ggcgtgggctttgtggtgccggacgacagccgtatgagcttcgacatcctgatcccaccg
gaagaggtaatgggcgcgcgaatgggctttgtggtggtggttgaactcacccaacgccca
acccgtcgtaccaaagcgatcggtaaaatcgttgaagtgctgggcgataacatgggtacc
agcatggctgtggacatggcgctgcgtacgcatgaaatcccttacgtctggccgcacgcg
gttgaagaacaggtcaaagatctgaacgaacaggtgccggaagaagccaaagtcggtcgc
gtggacttgcgtgatttgccgctggtgactatcgatggcgaagacgcgcgtgacttcgat
gacgccgtgttctgcgagaagaaacgcggcggcggctggcgtttgtgggtggcgattgct
gacgtcagctattatgttcgccctaacacgccgctcgacgccgaagcgcgcagtcgcggt
acatcggtgtacttcccgtcgcaggtcgtaccgatgctgccagaagtgctctccaacggc
ctgtgttctctgaacccgcaggttgacaggttgtgtatggtctgcgaaatgaccatctct
accaaagggcgcttaaccggctacaaattctatgaagcggtgatgagctcgcatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggaattgcgcgagcaatat
gcgccgctggttaaacacatcgaagagctgcacaacctctacaaaacgctggagcaagcg
cgcgaagagcgtggcgggatctcctttgagagtgaagaagccaagttcatctttaacgct
gagcgccgtatcgaacgtatcgagcagacccagcgtaacgatgcgcacaagcttatcgaa
gagtgcatgattttagccaacatctcggcggcgcgtttcgttgagaaagccaaagagcct
gcgctgttccgtatccacgataagccgacgaccgaagccatcacctctttccgttctgtt
ctggcggagctgggtcttgaactgccgggcggcagcaagccagagccgcgtgattacgcc
gaactgttgactgcaatcgccgatcgtcctgacgcagaaatgctgcaaaccatgctgctg
cgttcgatgaaacaggcgatttacgatccagaaaaccgtggtcactttggtctggcgctg
cagtcttacgcgcactttacctcgccgatccgtcgttatccggatctgtcactgcaccgc
gccattaaatatctggtagcgcaagagcaggggcataagggcaataccactgaaaccggc
ggctaccattattcgatggaagaggtgctgcagttaggtcagcactgttctatggcggaa
cgtcgcgccgatgaagccacgcgtgatgttgcggactggctgaagtgtgactttatgctg
gatcaggtgggcaacgtctttaaaggcgtgattgccagcgtgaccggttttggtttcttc
gtccgtctcaatgagctgttcatcgatggtctggtgcacgtttcctcgctggacaacgat
tactatcgttacgatcaggtggggcaacgcctgaccggtgagtccggcggtcaaacgtat
cgtctgggcgatcgcgtagaagtgcgcgttgaagccgtgaatatggacgagcgtaagatt
gatttcagcctgatttccagtgaacgcgcgccgcgtaatgtgggtaaaaccgcgcgtgaa
agtgcgaaaaaagggtctggcggtaagagcaacggcaaacgtcgtcaggcaggcaaaaag
gtgaacttcgagccagacagcgctttccggggtgacaaaggcaaagcggcaccgaaacag
ccaaaagccccacaatccccaaaagcgaaagctgagaaagcggaaaaaggcgcgaaaaaa
ccgtcggctaaaacgcaaaaaatagccgctgccaccaaagcaaaacgcgcagcgaagaaa
aaaatcgctgagtaa
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