Sinorhizobium numidicum: PYH37_000520
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Entry
PYH37_000520 CDS
T09000
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PYH37_000520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_000520 (ligD)
Enzymes [BR:
enu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PYH37_000520 (ligD)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PYH37_000520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Aconitase_2_N
mRNA_cap_enzyme
GH97_C
Motif
Other DBs
NCBI-ProteinID:
WEX75155
LinkDB
All DBs
Position
2:535600..536586
Genome browser
AA seq
328 aa
AA seq
DB search
MARAPPKPPSDTPPPDPMPDRIDPCLALLVNSPPKGPDWAYEVKWDGYRVAVHVEPGRVR
VITRGGYDWTQRFPAIAEEACELGHDTMIIDGEAVVLDEHGRSDFGALQWALGKRPSLQD
NREIIFFAFDLLYIDGHDLRRLKQRERRRRLEPIVAGRTGLIRLSEEADAVGDEFLRVAC
EHGLEGIIAKHRESPYRSGRRPDWLKIKCVRSDSFLIIGFEPSTAMPGAIARLLLAARKG
DELVYVGGVGTGFSREVAVELRKLLEGMVTKKPAVALKRKGAVFTETVLVAEVEYRAWTE
DGKLRHPSFKGIRERADDATVYSLTRER
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcaccgccaaaaccaccgagcgacacgcctccaccagacccgatgccggat
cggattgacccatgcctggcgctgctggtcaacagtccgccgaaagggcctgactgggcc
tatgaggtgaagtgggatggctaccgcgtggccgtgcacgtcgagccggggagggtgcgc
gtcatcacacgtggagggtatgactggacgcagcgttttcccgccatcgcagaggaggcg
tgcgagctcgggcacgacacgatgatcatcgacggcgaggcggtcgtactcgatgagcat
ggccggtccgatttcggtgcgctgcagtgggcgctcggcaagcggccaagcctgcaagat
aaccgtgagatcatcttcttcgcattcgatctgctttatatcgacgggcacgatctgcgg
cgtctgaagcagagagagcgccggcgtcgtctggagccgatcgtcgccggccggacgggt
ctcattcgtctttcggaagaggcagatgctgtcggcgacgaattcctccgcgtcgcctgc
gagcacggtcttgagggaatcatcgcaaagcatcgcgaaagcccctatcgctcaggccgg
cgtcctgattggctcaagatcaagtgtgtgcgcagcgacagcttcttgatcatcggcttc
gagccatcgaccgcgatgcccggcgcgatcgcgcggctgcttctggccgcgagaaaaggt
gacgagctcgtctacgtcggcggcgtcggtaccggattctcgcgcgaggtggcggtggag
ctgcgtaagctgctcgaggggatggtcacgaagaaaccggccgtcgccttaaagcggaag
ggtgccgtatttaccgaaacggtgctggtcgccgaggttgaatatcgcgcttggacggag
gacgggaagctgcggcatccatcgttcaaggggatcagggaacgagctgatgatgcgacg
gtgtattctctgacacgtgagcggtag
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