Sinorhizobium numidicum: PYH37_004009
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Entry
PYH37_004009 CDS
T09000
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PYH37_004009 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_004009 (mfd)
Enzymes [BR:
enu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYH37_004009 (mfd)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PYH37_004009 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
DUF2067
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WEX79033
LinkDB
All DBs
Position
1:1840996..1844505
Genome browser
AA seq
1169 aa
AA seq
DB search
MIPGLDSKKILAATREVTIGPVPSGAEALILAELARAGAPVAYLLSDGQRVADLEQILGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLSALSALIAHRAKPHPAIVLVTVNAVLQK
ISPQDVIESLSFSARPGNQIRMDDLAARLERNGFERVPTVREVGEFAVRGGILDVYVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQIRSLDLNPMSEVSLTPETISHFRKQYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLQGFRIVTDHLVREAASERSKL
ILDYYEARRASASPAKSQISQGTPYKPVPPELLYLSAAGFGAALNERSAVRLSPFMEHEG
EARQVVTIEARQGQRWAKAAGEAEHGGERENVFDQAVKHIAEKRKKGAKVVISGWTEGSL
DRLLQVLAEHGLGNVRPVEALADLRSLKPGEAASAVLSLEAGFETGDLVVIGEQDILGER
MVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADD
AKLFLPVENIELLSRYGTEGTDAMLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RHAPVVVAHDGVYDEFAARFPYDETEDQLSSIEAVRDDLGSGRPMDRLICGDVGFGKTEV
ALRAAFIAAMNGLQVAVVVPTTLLARQHFKTFSDRFRGLPVRIHQASRLVGSKELSLTKK
EVAEGKTDIVVGTHALLGSSVKFANLGLLIIDEEQHFGVRHKERLKELKSDVHVLTLSAT
PIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLKSDVPELKIAVAHGQMPATELEDIMNAFYEGRFDVLLSTTIVESGLDV
PTANTLVVHRADMFGLSQLYQLRGRVGRSKVRAFALFTLPVNKTLTSTAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGW
SPQISVGTPVMIPEHYVPDLNLRLGLYRRLGELTDLNEIDGFGAELIDRFGPLPTELQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNREFPNPAALVGHIAKQGTLTKIRPDQSIF
FQRELATPEKRLSGAAMVMTQLAALAKPA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatacccggtctcgattccaaaaagattcttgccgcaacgcgcgaggtgacgatcggc
ccggtcccgtccggagccgaagcgttgatcctcgccgaattggcgcgggcgggagctccg
gtcgcttatctcctctcggacggccagcgggtcgctgatttggagcaaatactgggtttc
gtggcgccggacattccagtgcttacattgcccggctgggactgtttgccctatgaccgc
gtctctccgagcgccgacacctcggcgcgaagactatccgcgctgagtgcgctgatcgcg
catcgggcgaaaccgcatccggcgatcgtgctggtcaccgtcaacgcggtccttcagaag
atctcgccgcaagatgtgatcgagagtctctccttttcggcgcggccgggcaaccagatc
cgcatggacgatctcgccgcgcggctggaacgaaacggtttcgagcgggtgccgacggta
cgcgaagtcggcgagttcgccgtgcggggcggcatcctggatgtctatgtccccggcagc
ggtgagccactccgtctcgatttctttggcgatacgctggagacgatccgctccttcgat
ccggcaagccagcgcacgaccgggcagatccgctctctcgatcttaatccgatgagcgag
gtgtcgctgacgccggagacgatcagccacttccgcaagcaatatctttcgctcttcggt
gcggcgacccgcgacgacgctctctaccaggcggtatcggaggggcgccgctacgccggc
atggagcattggctgccgctcttctatgaccgcctcgaaacggtcttcgattatcttcaa
ggctttcgcatcgtaacggatcacctggtgcgcgaagcggcgtcggagcgctcgaagctc
atccttgactactacgaggcacgtcgcgcttccgcctcgcctgccaaatcgcagatttca
caaggaacgccctacaagccggtgccgccggaactgctttacttgagcgccgcgggcttc
ggtgcggcgctcaacgaacgcagtgcggttcgcctctcgccgttcatggaacacgaaggt
gaagcgaggcaggttgttaccatcgaggctcggcaaggacagcgctgggcgaaggcggcg
ggcgaagccgagcacggcggcgaacgcgaaaatgtcttcgatcaagctgtaaagcacatc
gccgaaaagcgaaaaaagggcgcaaaagttgtcatttccggctggacggagggatcgctc
gaccgccttcttcaggtcctcgccgagcatggccttggcaatgttcgtccggtcgaggcg
ctcgccgatctgcgttcgctgaagcctggcgaggcggcttccgccgtgctcagcctagag
gcgggcttcgaaaccggtgacctcgtggtgatcggtgagcaggacattctcggcgagcgg
atggtgcgcaggtcgaaacggcgtaagcgcggtgccgatttcatcgccgaagtaacgggc
ctcgacgaaggcagctacgtcgttcatgccgaacacggcatcggccgtttcgttggcctg
cgcacgatcgaggcagccggcgcgccgcatgattgccttgaactcgtctatgccgacgat
gccaagctcttcctgccggtagaaaacatcgagcttctgtcgcgctatggcaccgagggc
accgacgcgatgctcgacaagctcggcggcgtcgcgtggcaggcgcgcaaggccaagctc
aagaagcgattgctcgacatggccggcggtctgatccgcatcgccgccgagcggcatacg
cgacatgcacccgtcgtggtcgctcatgacggtgtctacgacgaattcgccgcgcgcttc
ccctatgatgagaccgaggatcagctgagttcgatcgaggccgttcgcgacgatctgggc
agcgggcgtccgatggaccgtctgatctgtggcgacgtcggcttcggcaagacggaagtg
gcgctgcgtgccgccttcatcgccgcgatgaacggcttacaggtcgctgttgtcgtgccg
acgaccctccttgcgcgccagcatttcaagaccttttccgaccggtttcgtggccttccg
gtgcgcattcaccaggcttcccgcctcgtgggctcaaaggaactgtcgctgacgaagaag
gaagtggcggaaggcaagacggacatcgtcgtcggcacgcacgcgctgcttggttcatcc
gtgaaattcgccaatctcggccttctcatcattgacgaagagcagcatttcggcgtcagg
cacaaggaacggctcaaggagttgaagtccgatgtgcacgttttgaccctgtcggcgaca
ccgattccgcgtacgctgcaactggcattgacgggcgtccgcgagttgtcgctgatcacc
acgccgccggtcgaccgaatggctgtgcgcacgttcatttcgcccttcgatgccctggtg
atccgcgagacgctgatgcgcgagcactatcgcggcgggcagagcttctatgtctgcccg
cgtttgagcgatctttcggagattcacgatttcttgaaatccgacgtaccggaactgaag
atcgcggtggcgcacgggcagatgccggcgaccgaactcgaagacattatgaatgccttc
tatgaaggacgctttgatgtgctcctgtcgacgacgatcgtggagtccggtctcgacgtg
ccgaccgccaacaccttggtcgtccatcgcgcggacatgttcggcctttcccagctttat
cagcttcgcggccgggtagggcgctcgaaggtgcgcgccttcgcgctcttcacgctgcca
gtgaacaagacgctgacgtcaacggccgagcgccgcctgaaagtgctgcaatcgctcgac
acgctcggcgctggcttccagctcgccagccacgacctcgacatccgcggcgctggcaat
ctcctcggggaggagcagtccgggcacatcaaggaagtcggtttcgaactttatcagcag
atgctggaagaggccgtcgcggaactcaagggcgaggaggagatccacgacaccggctgg
tcgccgcagatatcggtcggaacaccagtgatgatacctgaacattacgtgcccgatctc
aacctcaggctcgggctttaccgtcgtctcggcgaactgacggaccttaacgagatcgac
ggttttggtgcggaactgatcgatcgtttcggcccgctgccgacggagctccagcatctc
ttgaagatcgtctacatcaaatcgctctgccgcaccgcaaatgtcgagaaactcgatgcc
gggccgaagggtgttgtcgtccagttccgcaatcgggaattcccgaatcccgccgctctc
gttggccatatcgccaagcagggaacgctcaccaagatccggccggaccagagcatcttc
ttccagcgcgagcttgcgacgccggaaaaacggctgtccggcgccgccatggtgatgacc
cagcttgccgctctggccaaaccagcctga
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