Sinorhizobium numidicum: PYH37_005296
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Entry
PYH37_005296 CDS
T09000
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PYH37_005296 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_005296 (ligD)
Enzymes [BR:
enu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PYH37_005296 (ligD)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PYH37_005296 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WEX76943
LinkDB
All DBs
Position
1:3158439..3161036
Genome browser
AA seq
865 aa
AA seq
DB search
MPTPHDPLSEYNRRRDFTKTSEPKGKAAAARKGRKLFLVQKHDATRLHYDFRLEWKRVLK
SWAVTRGPSLNPRDKRLAVRTEDHPMAYGDFEGTIPENQYGGGTVMLWDTGWWEPEGDPD
EGLKKGKLTFQLHGSRMHGGWALVRMRPRHGEKRENWLLVKETDEAASEDGESLINENIT
SVRTGRTMEEIAEGKGERAARVWHSNKSAAANVKAGAVARGRHTGKQPRRISSAKLPAFR
EPQLATLVKEAPSGDDWLYEVKFDGYRLMAAIGGGTVRCYTRKGLDWTAKFPAIASTLAE
LHCESALIDGEAVATSGEGSKFSALQKAWRTGAGTRFYVFDLIELDGKDLSGKPLVERKR
RLKTLIESGGPTNPVQYSAHVRGNGEQILAAMCKAGQEGIIAKEASASYRSHRTGSWLKI
KCTKRQEFVIGGYSPSSKPRRAFASLLVGTFEYGKLVYRGRVGTGFDEETMQVLAAAFAR
RKRETPPFEAVPPRIRRQAVWLQPDLVAEVDFTEFTDDGHIRHGAFEGLREDKEAKAVKL
ETPKSADANAGSGKSKPTSKGRAASRSHGDKDILGVRISHPDRILFEGQGITKIDLAHYY
AVVADRMLRFAADHPVSLVRCPQGRQRQCFYQKHASDGFPGEIREVPIEESSGGTENYMY
VHDAKGLVAAVQMGTMEFHIWGARINRLETPDRLVFDLDPDPSVDFATVKRAAVALRDEL
ADIGLKTFPMVTGGKGVHVIAPLVPRASWDEAKPFAKKIAQSFANRDPDHFIATMSKAKR
KGRIFIDWLRNERGATAICPYSSRAREGGPIATPVGWDELEHLGAANTFHIADILERTEA
GADPWPEFAKTKQSLTKKILNSIAE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcctcacgacccgctatcggaatacaatcggcgccgtgatttcaccaagacg
agcgagccgaagggaaaggccgcggcggcgcgcaagggccgaaagctcttccttgttcag
aagcatgacgcgacgcgacttcattatgatttccgcctagaatggaaacgcgtcctcaag
agttgggccgtgacccgcgggccgagcctcaatccgcgagacaagcggctcgcggtgcga
acggaagatcaccccatggcctatggcgacttcgagggcacgattccggaaaaccagtac
ggcggcggcacggtcatgctttgggacaccggctggtgggagccggaaggagaccccgat
gaaggattgaagaagggcaagctcacgttccagttgcatggcagccgaatgcatggcggc
tgggcgctggtccgcatgcgaccgcgccatggcgagaaacgcgaaaactggctgctggtc
aaggaaacggacgaggctgcctccgaggacggcgagagcctgataaacgagaacatcacc
agcgtccgcaccggccgcaccatggaggaaatcgccgagggcaagggcgaaagagcggcg
cgtgtctggcattcgaacaagagcgcggccgcgaacgtcaaggcaggcgcagttgcacgc
ggtcgtcacaccggtaagcagccgcgccgaatatcgtcggccaaactgcccgccttccgc
gaaccgcagctcgcgacgctcgtaaaggaggccccgagtggagacgactggctgtacgaa
gtgaagttcgacggctatcggctgatggcagcgatcggcggcggcaccgtgcgctgttat
acccgcaagggcctcgactggaccgccaaatttccggcgatcgcatcaacgctcgcggaa
cttcattgcgagtccgcgctgatcgacggcgaggccgtggcgacatccggtgaaggctcg
aagttttcagcgcttcagaaagcctggcggaccggcgccggaacccgcttctatgtcttc
gatcttatcgagctcgacggcaaggacttgagcggcaagccgctcgtcgagcgcaagaga
cggctgaaaacgctgatcgagagcggtggacctacgaaccccgtgcaatatagcgcacat
gtgcgcggcaatggggagcagatcctggctgccatgtgcaaggccgggcaggaaggcatc
atcgccaaggaggcaagtgcctcatatcgcagccatcgcaccggaagctggctgaagatc
aagtgcacgaaacgccaggaattcgtcatcggcggctactccccttcctcgaagccgaga
cgcgcgttcgcctcgcttctcgtcggtaccttcgagtacggcaaactggtctatcggggg
cgtgtgggaaccggcttcgacgaggagaccatgcaagtactcgccgcggcatttgccagg
cgcaaacgcgagacgccgccgttcgaggcggtaccgccgcgcataagacgccaagccgtt
tggctgcagccggatcttgtcgcggaggtggacttcacggaattcaccgatgatgggcat
attcgtcacggtgcgttcgagggactgcgcgaggacaaggaggccaaggccgtgaaactg
gagacgccgaaatcagcagacgcaaatgccggcagcggcaagagcaaacccacttctaaa
ggccgcgccgcatcgagatcgcacggagacaaagatattctcggcgttcggatatcgcat
cccgaccgcatcctcttcgaaggccaggggatcaccaagatcgatctcgcccactactat
gccgtcgtagcggacagaatgcttcgcttcgcggccgatcatcccgtgtcactcgtgcgc
tgcccgcagggtcgacaacggcaatgtttctaccagaaacatgcgagcgacggcttcccg
ggcgagatcagggaagtgccgatcgaggaatcgtccggtggcaccgagaactacatgtat
gttcatgatgcgaagggtctcgtcgccgccgtccagatgggcacaatggagtttcacatc
tggggtgccagaatcaacaggctggagacgcccgaccgacttgtgttcgacctcgatccc
gatccaagcgtcgactttgccaccgtgaagcgagccgccgtcgcgctgcgcgacgagctc
gccgacataggcctcaagacctttcccatggtgaccggcggcaagggcgtccacgtcatc
gcgcctcttgtcccacgcgcctcctgggacgaggccaagcctttcgccaagaagatcgcg
cagtccttcgccaatcgcgatcccgaccatttcatcgcgacaatgtccaaggcaaagcga
aagggacgcatcttcatcgactggctgagaaacgagcgtggcgccaccgctatttgcccc
tattccagccgagcccgcgaaggtggaccgatcgccacgccggtcggctgggatgaactc
gagcatctgggcgccgccaacaccttccatattgccgatatcctcgagcgcaccgaggct
ggcgctgatccctggccggaattcgccaagaccaaacaatcgcttacgaagaaaatacta
aactcgattgctgagtga
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