Endozoicomonas sp. SCSIO W0465: MJO57_14820
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Entry
MJO57_14820 CDS
T08210
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJO57_14820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enw03400
]
MJO57_14820 (mfd)
Enzymes [BR:
enw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJO57_14820 (mfd)
DNA repair and recombination proteins [BR:
enw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJO57_14820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AroM
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
USE39317
LinkDB
All DBs
Position
complement(3345978..3349436)
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQHTIPLPTHPGDKLQWGNLSKTGPAFTISCAAVRDNHPLMIITPDSSSASRLEEELAF
FLAEEGHIDVQQMPDWEILPYDTFSPHQDIISQRLSTLYHLPSADNRDRKKVLIVPVTTL
LHRLCPKSYLLGSGLSLQPGTRFIIDERRGQFEQAGYRCVDSVMEHGEFAIRGSIVDIFP
MGAETPYRVDLFDDEIESLRTFDPETQRSIATVQEIELLPGHEFPLDKQGIELFRSNFRE
TFDVNYRECPIYQDISGGIASPGIEYYLPLFFRETSTLFDYIPQNTRILVYDAMDSSLDH
FYSDVHSRYENRRVDPQRPILPPSRVLMPSEELHRRLNDFPRVTLFEQPVAPKAGRFNLN
CQALPELTINARLEHPLAHLNTFINGINHVLLVAESAGRREVLLELLSQNNITPDLCDSW
PGFLREKPALAVCTGLLDNGLYLPEEQIAVIPEALLLGQRVQQSRRRKVDDEQSADQVIR
NLTELRIGAPVVHIDHGVGRYRGLETLVVDGQTTEFLTLEYANEAKLYVPVASLHLISRY
TGADDELAPLHRLGSDQWSKVRRKAAEKARDVAVELLDIYARREARKGFPFIKPEQNYLA
FAAAFPFEETPDQQQTIAAVIHDMCAPKPMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQV
AILVPTTLLAQQHYESFKDRFADWPVEIDVISRFKSQKSVDQAKERLTEGKLDIIIGTHK
ILQGDLTFKDLGLLIIDEEHRFGVRHKEKLKSLRSEVDILTLTATPIPRTLNMAMSGIRD
LSIIATPPARRLSVKTFVRQYDQPLVKEAILRELLRGGQVYYLHNQVETIEKVASDLQEL
IPEARVVTGHGQMRERQLEQVMSDFYHKRYNVLICTTIIETGIDIPNANTIIINRADKFG
LAQLHQLRGRVGRSHHQAYAYLLTPPPKAITADAVKRLEAITEAQTLGAGFMLASNDLEI
RGAGELLGEGQSGQIQSVGFTLYTEMLERAVAAIRNGETPNPDQPLNHGTEVNLRLPALL
PEDYIHDVHSRLILYKRIAAADNEEKLKNLQVELIDRFGLLPDPAKNLFRQMKLKLHAQR
LGIKKVDASSKEARVEFEEQPNVDPMLIIQLIQSSPQQFRLEGSSILKYIDSMDTPEQRF
KATEVLLARLAG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacacactatccctctgccaactcatcccggcgacaagcttcaatggggaaac
ctctctaaaaccggacctgcctttaccatttcctgtgctgcggtaagggacaaccatccg
ctgatgattattaccccagacagttcatcagcgagccgactcgaagaagagctggccttt
ttccttgctgaagaggggcacatagacgttcagcaaatgccggactgggaaatattaccc
tacgataccttctcaccccatcaggatattatttcccagagactgtcaacgctttaccac
cttccttcggccgacaaccgtgacagaaaaaaagtgctgattgtgccagtcaccacgctg
ttacatcgtttgtgcccgaaaagctatttacttggcagcggcctgtctttgcaaccggga
acccggtttatcattgatgaacgccgaggccagtttgaacaggcagggtatcgctgtgtc
gactcagtgatggaacatggtgagtttgccatccgtggttctattgttgatatttttcct
atgggggctgagacgccttatcgggttgacctctttgatgatgagatagaatctctgaga
acttttgatcctgaaacccagcgttccattgcaacggttcaggaaatagaactgttacca
ggacacgaatttcccctggataagcaagggatagagctatttcgcagcaactttcgggaa
acttttgacgttaactatcgtgaatgcccaatttaccaggacattagcggggggattgcc
agccctggcattgaatactacctgcctctcttcttccgggaaacgtccacgctgtttgac
tacattccacaaaatacccgaatactggtctatgatgccatggactcatccctggaccat
ttttattcggatgttcactcacgttatgaaaaccgacgcgttgacccccaaaggccgatt
ctcccgccctccagggtgctgatgccttctgaagagttacatcgcagactgaacgacttc
cccagagtgacattgtttgaacagcctgttgcacctaaagccggtcggtttaacctgaat
tgccaagcgttgccggaactgaccattaatgcccggcttgagcacccactggcacacctc
aacactttcatcaatggcatcaatcatgtccttctggtcgccgaaagcgccgggcggaga
gaagtattgctggagctgctgagtcaaaataatataacccctgacctttgcgatagctgg
cccgggtttctcagagaaaagccggccctcgctgtctgtaccgggctactggataacgga
ctgtatttaccggaagaacaaattgctgttatcccggaagctcttttgctcggccagaga
gtacaacagagccggcgaagaaaagtggatgatgaacaaagtgctgaccaggttattcgc
aatcttacagaactgagaatcggcgcacctgtcgttcatattgaccatggcgttggcagg
tacagaggactggaaacactggtagtggatggccagaccactgagttcctgaccctggaa
tatgctaacgaagccaaactctatgttcctgtggcgtctcttcacctgatttcccgatac
accggtgctgatgatgaacttgccccactccatcggctgggtagcgaccaatggagcaag
gtgcgtcgaaaggccgcagaaaaagcaagagatgtggccgttgaactgctggacatttat
gcccgccgggaagctcgaaaagggtttccgttcatcaagccagagcaaaactacctggcc
tttgctgctgcctttccgtttgaagagacacccgatcaacaacagacaattgcagccgtc
attcatgatatgtgcgccccaaaaccaatggaccggctggtctgcggtgatgttggcttt
ggtaagacagaagttgccatgcgtgccgccttccttgctgtccacagcgggaaacaggtg
gcaattctagtgccaaccacccttctggcacagcagcactatgaaagctttaaggatcgc
tttgccgattggccggtagaaattgatgttatttcacgattcaagtcgcagaaatcggtg
gatcaggcaaaagagcggctcacggagggcaaactggatatcattattggtacccacaag
attcttcagggtgaccttacatttaaagaccttggccttctgattattgatgaagagcac
cgctttggggtccgccataaagaaaagctcaaatcattaagatccgaggttgatatcctg
acgctgaccgcaacaccgatcccaagaacactcaatatggccatgtccggtattcgtgac
ctgtcgattattgcaacaccaccggcacggcggctgtccgttaaaacctttgttcgtcaa
tatgatcagcccctggtaaaagaagcgattctccgggaactgcttcgtggcggacaggta
tactatctccataatcaggttgaaaccattgagaaagtagcgagtgacctgcaggagctg
attccggaagcaagggtcgtcacaggtcatggtcagatgcgtgaacgtcagctcgaacag
gtaatgtcagacttttaccataagcgttacaacgttctgatatgcacaaccattattgaa
accggtatcgatatccccaatgccaataccatcatcatcaacagagccgacaaattcgga
ctggcgcaactgcatcagctgagaggcagggttggccgctcacaccatcaggcatatgcc
tacctgttaacaccgccaccaaaagccatcactgctgacgccgtgaaacggcttgaagca
attaccgaggctcaaacactgggtgccggtttcatgctggcctcgaacgatctggagatc
agaggagctggcgaactgctgggtgaaggtcagagtggccagatacagagcgtagggttt
acgctctacaccgagatgcttgaacgggccgttgctgccattcgcaatggcgaaacaccc
aatccggaccagcctttgaaccatggcaccgaagtgaatttacggcttccggccctttta
cctgaggactatattcatgatgttcatagccgcttaatcctctataagagaattgccgct
gctgataatgaggaaaagttgaaaaaccttcaggttgagctgatcgatcgatttggtctg
ttacccgatccggccaaaaacctgttccgccagatgaagttaaaactccatgctcagaga
ctgggaatcaagaaggttgacgccagcagtaaagaggcaagggtagagtttgaagaacag
cccaatgtcgatcccatgctgattattcaacttattcagtcaagcccacagcagttcaga
ctggaaggaagcagcatcttaaagtacattgactcaatggacactccagagcagaggttt
aaggcgacagaagtacttctggccaggcttgctggttaa
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