Enterobacter sp. E20: NI40_002205
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Entry
NI40_002205 CDS
T04118
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
enx
Enterobacter sp. E20
Pathway
enx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI40_002205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enx03019
]
NI40_002205
03016 Transfer RNA biogenesis [BR:
enx03016
]
NI40_002205
Enzymes [BR:
enx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NI40_002205
Messenger RNA biogenesis [BR:
enx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NI40_002205
Transfer RNA biogenesis [BR:
enx03016
]
Prokaryotic type
tRNA degradation factors
NI40_002205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
TFIIE_beta
MetOD2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ALL16006
LinkDB
All DBs
Position
466384..468828
Genome browser
AA seq
814 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTTMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKTGNGKPGGGKRRQAGKKVNFEPDSAFRGEKKQKPKA
AKKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctattcccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgatctgtacctctcatctgaacagatgaaaatgtgcatccac
ggcgaccagatcctggcgcagccgctgggcgctgaccgtaaaggccgccgcgaagcgcgc
gtggtacgcgttctggtgccaaaaaccagccagatcgtcggccgctactttaccgacgcg
ggcgtaggcttcgtggtgccggacgacagccgtctgagcttcgacattctgatcccacct
gaagaggtgatgggcgcccgcatgggctttgtggtggtggttgaactcacccagcgccca
acccgtcgcaccaaagcggtaggtaaaatcgtcgaagtgcttggcgacaacatgggcacc
acgatggccgttgatatggcattgcgtacccatgaaattccgtacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgcgaagaagtgcctgaagaatccaaagtgggccgc
gtggatctgcgctccctgccgctggtcactatcgacggtgaagacgcccgcgactttgat
gacgccgtatactgtgagaaaaaacgcggtggtggctggcgtctgtgggttgctatcgct
gacgtaagctattacgtccgtccgcacaccccgctggataacgaagcccgcagccgcggt
acctcggtctacttcccgtcccaggtcgtgccgatgctgccggaagtgctgtctaacggc
ctgtgttccctgaacccgcaggttgaccgtctctgtatggtttgcgagatgaccatctcc
accaaagggcgcttaaccggctataagttctacgaagcggtgatgagctcgcacgcgcgt
ctgacctataccaaggtctggcatatgctgcagggcgaccaggatctgcgcgaacaatac
gcgccgctggtcaaacacatcgaagagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggagggatctcgtttgagagcgaagaagcgaaattcattttcaacgcc
gaacgccgcattgagcgtatcgagcagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgtatgatcctggcgaacatctcggcggcacgattcgtcgagaaagccaaagagcct
gcgctgttccgtattcacgataagccgaccacggaagccattacgtcgttccgctccgtg
ctggctgaactgggtctggaactgcccggcggcaacaagccagagccgcgcgattacgct
gagctgctggagtctattggcgaccgtcctgacgcagaaatgctgcagacgatgctgtta
cgctctatgaagcaggcgatttacgatccggaaaaccgcggacacttcggcctggcgctg
cagtcttacgcccactttacgtcgccgatccgtcgttatcctgacctctctctgcaccgt
gcgatcaagtatctgctggcgcaggagcagggccataaagggaacaccaccgaaaccggt
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgctccatggccgaa
cgtcgtgccgatgaagcaacacgcgacgtggcggactggctgaagtgtgactttatgctc
gatcaggtcggtaacgtctttaaaggcgtgattgccagcgtgaccggctttggtttcttc
gttcgtctggacgagctgttcatcgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgaccaggtcggccagcgcctgattggcgaatctggcggccagacctac
cgtctgggcgaccgtgtggaagtgaaggtcgaagccgtgaatatggacgaccgtaagatc
gacttcagcctaatctccagcgagcgcgcgccgcgtaacgtcggtaaaaccgagcgtgaa
agggcgaaaaaaaccggtaacggtaaaccgggcggcggtaaacgtcgtcaggcgggcaag
aaggtaaacttcgagccggacagcgcgttccgcggcgagaagaaacagaagccgaaggcg
gcgaagaaagaagcccgttcagcgaaaaaaccttccgcgaaaacgcagaaaatcgctgcc
gccactaaagcgaagcgcgcggccaagaaaaagcaggcggagtaa
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