Endomicrobium proavitum: Epro_1204
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Entry
Epro_1204 CDS
T03965
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
epo
Endomicrobium proavitum
Pathway
epo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
epo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Epro_1204 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
epo03400
]
Epro_1204 (mfd)
Enzymes [BR:
epo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Epro_1204 (mfd)
DNA repair and recombination proteins [BR:
epo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Epro_1204 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKL98583
UniProt:
A0A0G3WJV8
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All DBs
Position
1436761..1439916
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AA seq
1051 aa
AA seq
DB search
MSKEYISGVSGGSKAHFLIRRISEITTTGQNSGLRVFAFVKDEKLNSFYEDVKAFSSLLQ
TGKADAAIQSKPIVNSKIDVLLFPSDDAQLRAQTADKIKTLKNFIVCASDVSSKLPVAAP
NAQNSFIIKQNENLRLEEIVQKLISFGYERVPFVEDKLQFAVRGDIVDVWPAAGDAPVRI
LFEYETVEALRTFDPGSQLSNSFADEIKILSANISENSATIKEYFKRQSEKRKVESENNV
QDAAVLFFDYAISAAEEKEYNNFNIIINDALNSKAAYQGYKSFTGFSGDAQFFVNSLKAF
AQDGVKIKIYFANEGERERISDIFHDSGWSYAAPEFVFGNLSKGFYIENQKLAYVSSREM
LYKKSPVSFPKIKGGRRLEGIWEISAGDYVVHEKYGIGRYAGLKTIAREDRSSEYLCIEY
TKGDRLYVPPDEIKTVKKYIGAEGVRPKLYSMDTLAWERVKSRAREAAAEFAKELLNLYA
QRSKVSRAPFSVQTPWEKELSDAFAYDETPDQLKAIEDVEGDFSKPYPMERLVCGDVGYG
KTEVAVRAAFKVVQNGMQAAVLVPTTVLARQHFNTFSGRLSPFPTKIAALSRFQSKSEQK
TIIESLKNGQTDIVIGTHRLLQKDVEFKKLGLLIVDEEHRFGVKQKEKIKKLKADVDVLM
LSATPIPRTLSSALSGFRDLSVIETPPFGRLPIETALSLYDEKLIKNIINAELSRNGQVF
YVYNKVETILTKAEEVKKLSPAARVGVIHGQMHAKDIEEIMYKFTNMEIDVLIATTIIES
GIDIPSVNTMIVEEAENFGLSQLYQLRGRIGRDRRKAYCYLFYKDKTLSGEAVKRLEAMK
EFSELGSGFRLALKDLEIRGAGGILSASQSGFVRDIGYEMFSRLLEQEGKKIKGEASSAK
KTSETEIDLRVNALIPQEYIEQEDIRILFYRKLSDAKNFDELEKIKTELADRFGKIPPQT
QMLFQIAALRIEAVKLNIDRISEDSKYIYVYFCADADFSKADVAALIKNFSGMIEFLSGR
HYAFKLNKSEIKRESADFLKDFLRKLKVYFV
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaatacatatcaggcgtttcgggcggaagtaaagcccattttttgataaga
cgcatatctgaaattacgactaccggtcaaaattcaggtttgcgcgtttttgcttttgtt
aaagacgaaaagttaaactccttttatgaagacgtaaaagctttttcgtcgttattgcaa
accggaaaagctgatgcggcaatccaatcaaaaccaatagttaattctaaaattgacgtt
ttgcttttcccctcggacgacgctcaattaagagcccaaacagccgacaaaataaaaacc
cttaaaaattttatagtgtgcgcaagcgatgtttcctcaaagctgccggttgccgcgcca
aatgcgcaaaactcttttataattaaacaaaatgaaaatttgcggcttgaggaaatagtt
caaaagttgatttccttcggctatgaaagagttccgtttgttgaagataaacttcaattt
gcggttcgcggcgatattgttgacgtgtggcctgccgccggcgacgctccagtgcgaata
ctttttgaatatgaaactgttgaagctttaagaacttttgacccgggaagccagctgtca
aactcttttgccgacgaaattaaaattttatccgcgaacatctccgaaaactccgcaact
ataaaagaatatttcaaacgacaaagtgaaaagcggaaagtggaaagtgaaaataacgtc
caagacgcagctgttttgttttttgattatgcaatttcggcagccgaagaaaaagaatat
aacaatttcaatatcattataaatgacgcgttaaactctaaagccgcatatcagggatat
aaatcttttaccggtttttccggcgatgcgcagttttttgttaactctctcaaagcgttt
gcgcaggacggcgttaaaataaaaatttattttgcaaacgaaggcgagcgcgaaagaatt
tccgatatttttcacgatagcggctggagttacgccgcgccggaatttgtgtttggcaat
ctttcaaaaggtttctacattgaaaaccaaaaacttgcgtatgtttcaagccgcgagatg
ctttataaaaaaagccctgtaagtttccctaaaattaaaggcggcagaaggcttgaggga
atttgggaaatttccgccggcgattatgtggttcacgaaaaatacggaatcggccgctac
gcaggattaaaaactattgccagagaagacaggtcaagcgaatatctttgcatagaatac
accaaaggcgacagactctacgttccgccggatgaaataaaaacagtaaaaaaatatata
ggcgccgaaggcgtgcgtccgaaactttattctatggacacgcttgcgtgggaaagagta
aaatccagagcgcgcgaagcggcggcggaatttgccaaagaacttttaaatctttacgct
caaagaagcaaagtgtcgcgcgcgcctttcagcgtgcaaacgccgtgggaaaaagagctt
tccgacgcgtttgcttacgacgaaactcccgaccagcttaaagccattgaagacgttgag
ggagatttttcaaaaccttaccctatggagcgtcttgtctgcggcgacgtgggttacgga
aaaaccgaagttgccgtgcgcgccgcgtttaaagttgtgcaaaacggaatgcaggcggcg
gtgttagttccaacaacggttttggcgcgccagcattttaatactttttccggaaggctt
tcgccttttcccactaaaattgcggcgcttagcagatttcaaagcaagtccgagcaaaaa
acaataattgaaagcttaaaaaacgggcaaacggatattgttataggcacccacagactg
ctgcaaaaagacgttgagtttaaaaaactcgggcttttaattgtggacgaagagcaccgt
ttcggcgttaaacagaaagaaaaaataaaaaagttgaaagccgacgttgacgttttaatg
ctttcggcaacgcctataccaagaactttgtcgtcggcgctttccggttttagagatttg
tcggttatagaaacgccgccgttcggaaggcttcccatagaaaccgcgctttctctttac
gacgagaaacttataaaaaatataattaatgcggaactttccagaaacgggcaggttttt
tacgtttacaataaagttgaaacaattctcacaaaagccgaagaagttaaaaaactttct
cccgccgcgcgcgtgggcgtaattcacgggcaaatgcacgcaaaagatattgaagaaata
atgtataaatttacaaatatggaaattgacgttcttatagccacaactattatagagtcg
ggaatagatattccgtcggtaaataccatgatagttgaagaggccgaaaatttcgggttg
tcgcagctttaccagcttcgcggaagaataggaagagaccgccgaaaagcgtattgctat
ttgttttataaagacaaaactttaagcggcgaggctgtaaaaaggcttgaagccatgaaa
gagttcagcgagcttggttcggggttcagacttgcgcttaaagatttggaaataagaggc
gcgggagggattctttccgcaagccaatccggttttgtgcgcgacataggctacgaaatg
ttttcaagacttcttgagcaagaaggcaaaaagataaaaggcgaagcttcgtccgccaaa
aaaacttccgaaactgaaatagatttgcgcgttaatgcgttaatacctcaagagtatatt
gaacaggaagatataagaatactgttttacagaaaactttcggacgctaaaaattttgac
gaactggaaaaaataaagacggaacttgcagaccgtttcggcaaaattcctccgcaaacg
caaatgctgtttcaaatagcggctttaagaatagaggctgtaaaattaaatatagacaga
atttccgaagattcaaaatatatatacgtttacttttgcgcggacgcggatttctcaaaa
gcggatgttgccgcacttatcaaaaatttttcaggcatgattgagtttttaagcggcaga
cattacgctttcaagcttaacaagagcgaaataaaacgcgaaagcgcggattttttaaaa
gatttcttgaggaaactgaaagtgtattttgtttga
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