Equus przewalskii (Przewalski's horse): 103565075 Help Entry 103565075         CDS       T04644                                  Symbol UPF1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism epz  Equus przewalskii (Przewalski's horse) Pathway epz03013   Nucleocytoplasmic transport epz03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:epz00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     103565075 (UPF1)    03015 mRNA surveillance pathway     103565075 (UPF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:epz03019]     103565075 (UPF1) Enzymes [BR:epz01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      103565075 (UPF1)     5.6.2.5  RNA 5'-3' helicase      103565075 (UPF1) Messenger RNA biogenesis [BR:epz03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      103565075 (UPF1)    mRNA cycle factors     Common to processing body (P body) and stress granule      103565075 (UPF1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  103565075 NCBI-ProteinID:  XP_008539246 LinkDB All DBs Position Un AA seq 1004 aa AA seqDB search FEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAK CKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINW DSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPG VDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAY FTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVE VTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFT AQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN IAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET GELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEP ECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRM HPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSY LNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIA SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL WNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPG SVYDRSSQGESALRGPAGPVGSSEFAHIWALSGRACCGRQNLLQGALDCSFSGRGTPKGK TGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQ PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY NT seq 3015 nt NT seq  +upstreamnt  +downstreamnt ttcgaagaagatgaagaagatacgtattacacaaaggatctccccgtacatgcctgcagt tactgtggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaagtggttc tgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagggcaaag tgcaaagaggtgactctgcacaaggatgggccgctgggggagacagtcctggagtgttac aactgtggctgccgcaacgtcttcctccttggcttcatccccgccaaggccgactccgtg gtggtgctgctgtgcaggcagccctgtgccagccaaagcagccttaaggacatcaactgg gacagctcgcagtggcagcccctgatccaggaccgctgcttcctgtcttggctggtcaag atcccttctgagcaggagcagctgcgggctcggcagatcactgcccagcagatcaacaag ctggaggagctctggaaggaaaatccttccgccaccttagaggacttggagaagccaggg gtggacgaggagccgcagcacgtcctcctgcggtacgaggacgcctaccagtaccagaac atctttggccctctggtcaagctggaggctgactatgacaagaaactgaaagagtcccag actcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctac ttcactttgcccaagactgactctgacatgcggctcatgcagggggatgagatatgcctg cggtacaaaggggacctggcgcccctgtggaaagggatcggccacgtcatcaaggtccct gataattatggcgatgagattgccattgagctgcggagcagtgtgggtgcacccgtggag gtgactcataacttccaggtggatttcgtgtggaagtcaacctcgtttgacaggatgcaa agtgcattgaaaacctttgctgtggacgagacgtccgtgtcaggctacatctaccacaaa ctgctcggccatgaggtggaggatgtgatcatcaaatgccagctgccaaagcgcttcacg gcacaggggctccctgaccttaaccactcgcaggtttacgctgtaaagactgtgctgcag aggccgctgagcctgatccagggaccacctggcacggggaagactgtgacctcggccacc atcgtctatcaccttgctcgacaaggcaacgggcctgtgctcgtctgtgctccgagtaac atagccgtggatcagctgaccgagaagatccatcagactgggctgaaagtcgtgcggctg tgtgccaagagccgtgaggctatcgactccccggtgtcgttcctcgccctgcacaaccag atcaggaacatggatagcatgccggagctccagaagctgcagcagctgaaggatgagact ggggagctgtcgtctgcagacgagaagcggtaccgggccctgaagcgcactgccgagagg gagctgcttatgaacgcagatgtcatctgctgcacgtgtgtgggtgcaggcgacccgagg ctcgccaagatgcagttccggtccattttaatcgatgaaagcacccaggccaccgaacca gagtgcatggtccctgtggtcctcggagccaagcagctgatccttgtgggcgaccactgc cagctgggccctgttgtgatgtgcaagaaggccgccaaggccgggttgtcccagtcgctc ttcgaacgcctggtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatg caccctgcgctcagtgccttcccgtccaacatcttctacgagggctctcttcagaacggc gtcactgcagcggaccgtgtgaagaaggggtttgacttccagtggccccaacctgataag ccaatgttcttctacgtgacccagggccaggaggagatcgccagctcgggcacctcctac ctgaacaggacggaagccgcaaatgtggagaagatcaccacaaagctgctgaaggcaggt gccaagccggaccagatcggcatcatcacgccctacgagggccagcgctcctacctggtg cagtacatgcagttcagcggctccctgcacaccaagctctatcaggaggtggagatcgcc agtgtggatgcattccaggggcgcgagaaggacttcatcatcctctcctgtgtgcgcgcc aacgaacaccaaggcatcggctttttaaacgaccccaggcgacttaacgtggccctgacc agagcgcgatacggggtcattattgtgggcaacccaaaggccctgtccaagcagccgctc tggaaccacctgctgaactactacaaggagcagaaagtgctggtggaagggcccctgaac aacctgcgggagagcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaac ccgggagcccgctttatgacgacagccatgtatgatgcccgggaggcaattatcccagga tcggtctatgaccggagcagccagggtgagtccgctctgcgggggccggcgggccctgtt gggtcgtcagagtttgctcatatctgggctttgagcgggcgtgcttgctgtgggcgtcag aacctcctccagggagccctggactgttctttttcaggccggggcaccccgaaaggcaag actggccgtggggggcgccagaagaaccgctttgggctccctggacccagccagacgact ctccccaacagccaggccagccaggatgtggcatcgcagcccttctcacagggggcactg acccagggctacatctccatgagccagccctcccagatgagccagcccggcctctcgcag cccgagctgtcccaggacagttaccttggtgatgagtttaagtcacagatcgatgtggcg ctgtcacaagactccacgtaccagggggagcgggcgtaccagcacggtggagtgacgggg ctgtcccagtactag

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