Eremothecium cymbalariae: Ecym_5486
Help
Entry
Ecym_5486 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03008
Ribosome biogenesis in eukaryotes
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ecym_5486
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_5486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erc03021
]
Ecym_5486
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_5486
03009 Ribosome biogenesis [BR:
erc03009
]
Ecym_5486
03016 Transfer RNA biogenesis [BR:
erc03016
]
Ecym_5486
Transcription machinery [BR:
erc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Ecym_5486
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
Ecym_5486
Ribosome biogenesis [BR:
erc03009
]
Eukaryotic type
Pre-60S particles
RNases
Ecym_5486
Transfer RNA biogenesis [BR:
erc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Ecym_5486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Rubella_E2
Mucin
Motif
Other DBs
NCBI-GeneID:
11472041
NCBI-ProteinID:
XP_003647048
UniProt:
I6NDT9
LinkDB
All DBs
Position
5:992547..995555
Genome browser
AA seq
1002 aa
AA seq
DB search
MGVPSFFRWISRKYPKIISPVLEETPQIVDGVKLPIDYSSPNPNGELDNLYLDMNGIVHP
CSHPENKPAPETEDQMLLEVFEYTNRVLNMARPRRVLMIAVDGVAPRAKMNQQRSRRFRS
ARDAKFANEEKARVLAEREAYGELIDDSVKAKTTWDSNAITPGTPFMDKLAAALRYWTSF
KLATDPGWKHLQVIISDATVPGEGEHKIMNFIRSQRVDSQYNPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQDNRRRPRAQEMINMSEEDKQHLIEQDAEKPFLWLHVSVLREY
LAAELHVQRLSFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILVEIWKTVLP
SLKTYLTCDGELNLAGVQKVLEQLGSREPELFKRKHEQESRKKEAQERRKMLKNNPNVTK
GAVDRNFTVPLESMPVYDVNGKAADESLNLTNKDFANMRKEINLANEGDKTALGALQKRS
EENNGTIKTDAPDFSQEELRNAVEVSRVGNLSAAASLKERILAKKRKLAAQEEDGRESKA
ARLTTDAGAHQAGSDHQESQLDVPIMSKETPISGFIDTDKEVHLYEPGYHDRYYQAKFHA
PTKDIDSLRSDLARCYIEGIAWVLLYYYQGCPSWTWYYPYHYAPFAADFVNISDLVVSFD
LGQPFLPFEQLMGVLPAASGHNLPDVFRPLMSDPDSEIIDFFPEEFAIDMNGEKMAWKGI
ALLPFIDEQRLRTAVRKQYHLLSDEEKARNVQRNDVLIISNKNLNHENFLTKLYIDSASS
IHFKHFKTGLCGTVLPDSEGYRTNNKMLCPLDTGNLPEISTNLFLKMTYLMPTVSKTSNK
ALILNGYIPPAPQLSPADREAIIYKYPQRWNPHFMKNYIVPVGPAAITQYHPRLGGYRAF
VYHQQMMNSDRPSPASATTTTTTATGTTPTTPATASTATSRYTKNTNSHPYNSYPHNHYH
NRNNRHHHPPSSSSSSTYPQQNYSRQPPSSSSRQPSRFYRRH
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccttcattttttcgatggatatcaagaaagtatcctaagatcatctctcct
gttctcgaagagacccctcaaatagttgatggtgtaaagttgcccatcgactattcctct
ccaaatcccaatggagaattggacaatctatatttagatatgaatggtattgttcatcct
tgttcacacccagagaataagcctgctccggagacagaagatcaaatgcttcttgaagtt
tttgagtacactaacagggtattgaatatggcaaggccaaggagggtgctgatgatagcc
gttgatggtgttgcaccgagagctaagatgaatcaacaaagatcacgtcgatttcgtagt
gcgcgtgatgcgaagtttgcgaatgaggaaaaagctcgtgtgttagcagagcgtgaggcg
tatggagagttaattgatgattccgtgaaggcaaaaactacttgggattcgaatgcaatt
actccgggtacgccatttatggacaaattagctgctgcgctaagatattggacaagtttt
aaactagctactgaccctggttggaaacacttgcaagttattatcagcgatgctaccgta
ccaggagaaggtgaacataaaatcatgaactttataagatcacaaagagtagacagtcag
tacaatccaaataccactcactgtatctatggtttagacgccgatctgatatttttgggt
ctagctacgcatgaaccacatttcaagatcttacgtgaagacgtttttgctcaggacaat
cgtaggaggccacgcgcacaggaaatgatcaatatgtctgaagaagacaagcagcatttg
atcgaacaagatgcagaaaagccgttcctttggttacatgtaagtgtgctgagggaatac
ttagctgccgagctgcatgtacaaagactgtctttcccctttgacctggaaagggcaata
gacgattgggtatttatgtgcttcttctgtggtaacgattttctaccgcacttaccatgc
ctggatgtcagagagaacagcattgacattctagttgagatatggaagaccgtgctgcct
tctttgaaaacttatctgacatgtgacggtgaattgaacttagctggagtgcaaaaagta
ctagaacagcttgggagccgtgaaccggagctctttaagagaaagcatgaacaagagagt
cgaaagaaggaagcccaggagagaaggaagatgctgaaaaataatcctaatgtgacaaaa
ggcgctgtagacaggaacttcactgtgccccttgagagcatgcctgtttatgacgtaaat
gggaaagcagcagatgaatctttaaaccttaccaacaaggattttgccaacatgcgaaag
gaaattaaccttgcgaacgagggtgataagaccgctctaggagccctgcaaaagcgcagc
gaagaaaacaatggcacaatcaagaccgatgccccggatttttctcaggaggaactacgc
aatgcagtggaggtctccagagtcggaaatttgtctgcagctgcatcgttaaaagaacgt
attcttgctaagaaaagaaaactcgccgcacaagaggaagatgggcgtgagtccaaggca
gcccgcctgacaacggatgcaggtgctcatcaagcgggttccgatcaccaggagtcgcaa
ttggacgtcccaataatgtcgaaggaaacccccatatctggattcatcgacaccgataag
gaagtacatctatacgaaccaggctaccatgacagatattaccaggctaaattccatgcc
ccaacaaaagatatcgactccctgcgtagcgatctcgcccgttgctacatagaaggcatc
gcctgggtcctcctgtactattaccaaggctgcccatcgtggacatggtactacccttac
cactacgccccgttcgctgccgactttgtcaacatatcagacctggtcgtttccttcgac
ctaggtcagcctttcctcccattcgaacagctaatgggcgtgctgcccgctgcctcagga
cacaatctccctgacgtcttcagacccctcatgtccgacccagattctgaaatcatagac
ttcttcccagaggagtttgcaatcgacatgaacggtgaaaaaatggcctggaagggcatc
gccctccttccgtttatcgatgaacagcgtcttcgcaccgcagtacgcaaacagtaccat
ctcttatcagatgaagagaaagcccgcaatgtccaacgtaacgacgtcctaataattagt
aataaaaacctgaaccacgagaacttcctcacaaaactatacatcgactccgcttcttca
atccatttcaaacacttcaaaactggcttgtgcggtactgtcctccccgactcggaaggt
tacagaaccaacaacaaaatgctatgccctctagacacaggtaacctcccggaaattagc
acaaacctgttcctaaaaatgacatacctaatgccaaccgtttccaaaacttcaaacaaa
gccttaatactaaacggttacatccccccggcgcctcaactctctcctgccgatcgcgaa
gccatcatttacaagtatccgcaaagatggaaccctcatttcatgaaaaactatatcgtt
cctgtcggcccagcggctatcacccagtatcatccacgcctcggcggctatcgcgcgttt
gtataccatcaacagatgatgaactctgaccgcccatcgccagcctctgctaccaccacc
accactacagccacgggcaccacccccaccactcctgccactgcaagcaccgctaccagc
aggtatacaaagaatacaaattcccatccgtacaactcttatccccacaaccactaccac
aaccgtaacaaccgccatcaccacccgccttcctcttcctcctcatccacctaccctcag
caaaactattctagacaaccgccctcctcctcctcccgtcaaccgtcccgtttttaccgc
cgtcactaa
DBGET
integrated database retrieval system
