Erwinia sp. Ejp617: EJP617_13430
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Entry
EJP617_13430 CDS
T01935
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
erj
Erwinia sp. Ejp617
Pathway
erj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EJP617_13430 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erj03021
]
EJP617_13430 (rpoB)
03400 DNA repair and recombination proteins [BR:
erj03400
]
EJP617_13430 (rpoB)
Enzymes [BR:
erj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EJP617_13430 (rpoB)
Transcription machinery [BR:
erj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EJP617_13430 (rpoB)
DNA repair and recombination proteins [BR:
erj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EJP617_13430 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ADP11024
LinkDB
All DBs
Position
1475535..1479563
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRDNKLQME
LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEYIAGKVVAKD
YIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRINYLLVSGGVEAEKLDKLPRERWLELGLSDEDKQNQLEQLAEQYDE
LKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEDVSR
LREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggaaaacgtccacaa
gttctggacattccttatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggccaatatggactggaagcggcattccgttccgtattcccgatccaa
agctatagcggtaactctgagctacagtatgtcagctaccgtttaggcgaacctgtattt
gatgtgaaagagtgtcagattcgtggcgtcacgttctctgctcctctgcgcgttaaactg
cgcctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggtgaaattccactcatgaccgataacggtacctttgtcatcaacggt
acagaacgcgttatcgtttctcagctgcatcgtagtcctggtgtgttcttcgacagcgat
aagggtaaaacccactcttcgggtaaagtgctgtataacgcacgtattatcccttaccgt
ggttcatggttggacttcgagttcgacccgaaagacaacctgttcgtccgtattgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgctgaattacaccactgagcaaatc
ctcgatctgttcttcgaaaaagtggtttaccaaattcgcgacaacaaactgcagatggaa
cttgttccggagcgcctgcgtggtgaaactgcgtcatttgacattgagtcgaatggcacc
gtttacgtcgaaaaaggtcgccgcattaccgcgcgccatattcgtcagctggaaaaagat
gctgttgctcatatcgaagttccggttgagtacatcgcgggcaaagttgtcgctaaagac
tacatcgacgagagcaccggtgagctgctgatcgccgccaacatggagctgtcgttggat
ctgctggccaaactgagccagtcgggtcacaaacgtatcgaaacgctgttcaccaatgac
ctggatcacggcccgtacatttctgaaaccgtacgcgtcgacccaaccagcgatcgcctg
agcgcactggttgagatctaccgcatgatgcgtcctggtgagccaccaacgcgtgaagcg
gccgaaaacctgtttgagaacctgttcttctctgaagaccgttacgacctgtctgcggta
ggtcgcatgaagtttaaccgttctctgctgcgtgacgagatagaaggttccggcatcttg
agcaaagacgacatcattcaggtgatgaagaagctcatcggtatccgtaacggtattggc
gaagtggatgacatcgatcacctcggcaaccgtcgtatccgttccgttggcgaaatggcc
gagaaccagttccgtgttggcttagtgcgcgtagagcgtgcggtgaaagagcgtctgtcc
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccaatttctgcg
gcagtgaaagagttcttcggttccagccagctgtcacagtttatggaccagaacaacccg
ttgtctgagatcacgcacaaacgccgtatctctgcactgggcccgggcggtctgacgcgt
gagcgtgcaggtttcgaagtgcgagacgtacacccgactcactacggtcgcgtatgtccc
atcgaaacgccggaaggtccaaacatcggtctgatcaactctttgtctgtgtatgcacag
accaacgagtacggtttcctggaaaccccataccgtcgcgtgcgcgatggcgtggtgacc
gacgaaattcattacctctctgccattgaagagggtaactacgttatcgctcaggcaaac
accaacctcgacgacgaaggccacttcgtagacgacctggtgacctgccgtagcaaaggc
gaatcgagcctgttcagccgcgatcaggttgactatatggacgtttccacccagcaggtg
gtttccgtcggtgcgtcactgatcccgttcctggagcacgatgacgccaaccgcgcattg
atgggtgcaaacatgcaacgtcaggcggtacctactctgcgtgctgataagccgctggta
ggaaccggtatggaacgcgcggtagcggtcgactccggcgtcactgccgtagcgaaacgt
ggtggtaccgttcagtacgttgatgcatcgcgtatcgttattaaagttaacgaagacgaa
atgtacccgggcgaagccggtatcgacatttacaatctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggtgaaccgattgaacgcggt
gacgtgctggctgatggtccttcaaccgaccttggcgaactggcactgggtcagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcttagtctccgag
cgcgtggtacaggaagatcgctttaccactatccacattcaggaactggcctgcgtgtcg
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagcc
gcgctctccaaactggatgagtccggtatcgtgtacatcggtgctgaagtgaccggtggt
gacattctggtcggtaaggtcacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgcgctattttcggtgagaaagcgtctgacgttaaggactcttctctgcgtgta
ccgaacggcgtttcaggtaccgttatcgacgttcaggtcttcacccgtgacggtgtggaa
aaagacaaacgcgcgctggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagctggcctgttcagccgtattaactacctgctggtt
tccggcggtgttgaagcggaaaaactggacaagctgccacgcgagcgctggctggaactg
ggcctgagcgatgaagacaagcaaaaccagctggaacagctggccgagcagtacgacgag
ctgaagcacgagtttgagaaaaaacttgatgccaagcgccgcaaaatcactcagggcgat
gacctggcacctggcgtgctgaaaatcgttaaagtgtacctggcggttaaacgtcagatt
cagcctggtgacaaaatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccatcacgtatgaatatcggtcagattcttgaaacccacctgggtatggct
gcgaaaggcattggcgagaaaatcaacgccatgcttaagaagcaggaagacgtgtccagg
ctgcgtgagtttattcagcgtgcttacgatctgggtaccgacgtgcgccagaaagttgac
ctgaacaccttcactgacgacgaagtgctgcgtctggcagaaaacctgaaaaaaggtatg
ccaatcgccactccggtgtttgatggtgcgaaagagagcgaaatcaaagagctgttacag
cttggcggcctgccttcttccggccagatcaccctgttcgatggtcgtaccggtgagcag
ttcgaacgtcaggttaccgttggctacatgtacatgcttaaactgaaccacctggttgat
gacaaaatgcatgcacgttctaccggttcctacagccttgttacccagcagccgctgggt
ggtaaagcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggtgccgcgtataccctgcaggaaatgctgaccgtgaagtctgatgacgttaatggc
cgtacgaagatgtacaaaaacatcgtcgacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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