Erythrobacter sp. KY5: CD351_08715
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Entry
CD351_08715 CDS
T05511
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erk
Erythrobacter sp. KY5
Pathway
erk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD351_08715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erk03019
]
CD351_08715
Enzymes [BR:
erk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD351_08715
Messenger RNA biogenesis [BR:
erk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD351_08715
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
ERCC3_RAD25_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AWW74506
UniProt:
A0A2Z4K050
LinkDB
All DBs
Position
1857051..1858493
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AA seq
480 aa
AA seq
DB search
MTQFSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPS
IDRLREADNRIPFKSCRMLVLAPTRELVSQIAVSAKEYGALAGLKVQSIVGGTSVNKDRN
KLHRGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKE
RQTLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELIL
SGRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGK
TMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERA
YLKDIRKTTGAELDRLSLPENFRAVVEGVGPTKPEPRGATRVSAKKIRPKPAGASAGKPA
GDGSSKPKKPGGKHPSRKGRPSGRPGGNPNGNSRRSGGPGRRGRRGSPGGGSGRAQSANG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacccagttttctgatctcgggctttcacagcccgtactccaggctcttgacctcaag
ggctattctactcctactcccattcaggagcaggccattccgcctgtcctcgaaggccgc
gacctgctcggcatcgcgcagaccggcaccggcaagacagccgcgttcatgcttcccagc
attgatcgcctgcgcgaagccgacaatcgcatcccattcaagtcgtgccgcatgcttgtg
cttgcacccacgcgcgaactcgtctctcagatcgctgtgagcgccaaggaatatggcgcg
cttgccggccttaaggtgcagtcgatcgttggcggaaccagcgtcaacaaggatcgtaac
aagctgcatcgcgggaccgacatcctgattgcaacgccgggccggttgctcgatctgatc
gaccagaaggcgttcaacctcggctcggtcgaagtgctcgttctagacgaggctgaccag
atgctcgacctgggcttcgtccatgcgctgcgccgcatcagccagttggtgcccaaagaa
cgacagacgcttttcttcagcgcgaccatgcccaaggcgatcaaggaactcgtcagcggc
tattgcaacaatccggtgcaggtctccgtcacgcctgaaagcacgacggcagagcggatc
gaccagtaccttttcatggtgcagcaggacgaaaagcagtcgctcctcgagcttattctg
tcaggccgtcacaaggtgcccggcgaatttgagcgcatcctcatctttacccgaacgaaa
cacggcgccgaccgcgtcgtaaagaagctgagccgcgccggaatcccggcaaatgcgatc
cacggcaacaaatcgcagcctcaacgccagcgggcgctcgacgagtttcgtcgtggcaag
accatgatcctcgtggcgaccgatgttgcggcgcgcgggatcgacattcccggcgttagt
cacgttcttaattacgagctgcccaacgtgccggaacaatatgtccaccgcatcgggcgc
acggcacgtgcgggcaaggacggggtcgcaatcgccttttgcgccgaggacgagcgcgcg
tatctcaaggatattcgcaaaacgaccggcgcagagctcgaccgtctcagcctgccggaa
aacttccgcgccgtggtcgaaggggtcggcccgaccaagccagagccgcgcggcgcgaca
cgcgtttcggcaaaaaaaatcaggcccaagcctgccggcgcatcggcaggaaagcctgca
ggtgacggttcttccaagcccaagaagccaggtggcaagcacccttcgcgcaaaggccgg
ccttccgggcgtcccggcggcaatccgaatggtaactcccgccgcagcggtggtcccggt
cggcgcggtcgtcgcggttcaccgggcggcggcagcgggcgggctcaatcggcgaacggc
tga
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