KEGG   Encephalitozoon romaleae: EROM_021130
Entry
EROM_021130       CDS       T03458                                 
Name
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ero  Encephalitozoon romaleae
Pathway
ero03030  DNA replication
ero03410  Base excision repair
ero03420  Nucleotide excision repair
ero03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ero00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EROM_021130
   03410 Base excision repair
    EROM_021130
   03420 Nucleotide excision repair
    EROM_021130
   03430 Mismatch repair
    EROM_021130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ero03032]
    EROM_021130
   03400 DNA repair and recombination proteins [BR:ero03400]
    EROM_021130
Enzymes [BR:ero01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EROM_021130
    6.5.1.6  DNA ligase (ATP or NAD+)
     EROM_021130
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     EROM_021130
DNA replication proteins [BR:ero03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    EROM_021130
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     EROM_021130
DNA repair and recombination proteins [BR:ero03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     EROM_021130
   NER (nucleotide excision repair)
    Other NER factors
     EROM_021130
   MMR (mismatch excision repair)
    Other MMR factors
     EROM_021130
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 20520875
NCBI-ProteinID: XP_009264085
UniProt: I6ZHB3
LinkDB
Position
II:130010..131779
AA seq 589 aa
MSKILFSDFCATLEKINLTTKRLEIQSILTNYLKEVCETHPPSLAPALYLSTGMVYPEYF
NKELGVGENALVGVVAEFTGKSIKSIRNEYSKEGDLGTIAMKCRVSQLFIPKTQLEVMDV
FLGMRRIVNEGGPKSSSSKKRIILGMMVKCSPLESKYLIRLVEGRLKIGLALKTVLISLG
NVFSSDKVDEIKAAFNRQPDIGRLAECILEHGVEKLSTKFQVTPGIPLKPMLANPSKDLT
SAFKRVEDKRFACEYKYDGERVQIHRFGNNIETFSRNSEKTTEKYPDLMDLYNIADKDFI
IDGEIVAYDRKECKILPFQVLTTRKRKRVESSKIDVHVCVFGFDLIYFDGKTYIDELLEE
RRRVLHNSFKEMKGRFQFAEFKDCETPEDAEAFFNTSVEKGFEGMMVKTLGSDATYLPSQ
RSNKWIKIKKDYLEGMSDSLDLVVMGAYYGKGKRAGFYGGFLLGVYNDEEEKFEALCKIG
TGFDDNILSKLYEQLSSNLCGAPKNYSYKESIKPDVWVEAKYVWEVRAAGMSLSPIYNAG
GSRNGKGISLRFPRFIRERDDKDVKEVTTSSQIYQMYLDSKIENSEEFY
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgagcaaaattttgttttcagacttctgtgctacgctagagaaaataaacctgacaacc
aagcgcctagaaatccagtcgattttgacaaattatctgaaggaggtatgtgaaactcac
cctccatcgctagcaccagctctatatttgtctactggaatggtttatccggagtatttt
aataaggagcttggtgttggagaaaacgcccttgtaggtgtggttgcagagttcacaggg
aagtccatcaaaagtatcagaaatgagtactcgaaagaaggggatttagggactatagca
atgaagtgcagggtgtcacagctgtttataccgaagacacagctggaggtaatggatgta
tttcttggaatgaggaggatagtgaatgaggggggaccgaagtcctcttcctccaaaaag
agaatcattcttgggatgatggtcaaatgctcaccgttagaatccaagtatcttataaga
ctagttgaaggaaggcttaagataggattggctcttaagactgtattgataagccttgga
aatgtattttctagtgataaggtcgacgaaatcaaggcagcctttaatcgccagccggac
ataggaaggctggcagaatgcatacttgaacatggcgtggaaaagctttcaacaaagttt
caggttactcctggaattcctttgaagcccatgctagcaaatccttcaaaagacttgaca
tcagcattcaagagggttgaggacaaaagatttgcctgtgagtataaatacgatggggaa
agagtccagattcataggtttggtaacaatatagaaacattcagtagaaactccgagaaa
acaacggaaaagtatcctgatctaatggatctttacaacatagcggacaaagactttatt
attgatggagagattgttgcgtatgacagaaaagaatgcaaaatccttccttttcaggta
ttgacaacaagaaagagaaagagagtggagagcagcaagatagacgtccatgtatgtgtg
tttggatttgacctgatatattttgatggcaagacctatattgatgagttattggaggaa
aggagaagagtactacataactcattcaaagaaatgaaagggaggtttcagtttgccgag
tttaaggactgtgagacaccagaagatgctgaagcattcttcaatacatctgttgaaaaa
ggatttgaaggaatgatggtgaaaacgttgggatctgatgcaacttatctgccatcacag
agaagtaacaaatggataaaaataaagaaggactacctggagggtatgtctgattctttg
gacttagttgtaatgggggcgtattatggaaaggggaagagagccgggttttacggagga
tttttacttggagtgtacaatgatgaagaagaaaagtttgaggctttgtgtaagattggg
actggatttgatgataacattctatcgaagctttatgagcaactaagcagcaatctgtgt
ggggcacctaagaactattcatacaaagagtcgatcaagccggacgtctgggttgaagcc
aagtatgtatgggaggttagagcggctgggatgtcgctgtcgccaatatataatgccggg
gggagcagaaatggaaaaggaatatcattaaggtttcccaggtttataagagaaagagat
gataaagatgtaaaggaagtaactacttcctcccagatttatcagatgtacctagactca
aagattgagaattctgaggaattctattga

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