Escherichia ruysiae: OSH18_01755
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Entry
OSH18_01755 CDS
T09019
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
eruy
Escherichia ruysiae
Pathway
eruy02024
Quorum sensing
eruy02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
eruy00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OSH18_01755 (pdeR)
02026 Biofilm formation - Escherichia coli
OSH18_01755 (pdeR)
Enzymes [BR:
eruy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
OSH18_01755 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
GGDEF_2
PAS_4
PAS_10
Motif
Other DBs
NCBI-ProteinID:
WGM52918
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All DBs
Position
complement(341515..343500)
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AA seq
661 aa
AA seq
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MKTVRESTTLYNFLGSHNPYWRLSENSDVLRFSTTETTEPERTLQLSAEQAARIREMTVI
TSSLMMSLTVDESDLSVHLVGRKINKREWGGNASAWHDTPAVARDLSHGLSFAEQVVSEA
HSAIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAISRRNNSSFFRSG
NAYEVERWVQTRKGQRLFLFRNKFVHSGSGKNEIYLICSGTDITEERHAQERLRILANTD
SITGLPNRNAMQELIDYAINEADEGKVGVVYLDLDNFKKVNDAYGHLFGDQLLREVSLAI
LSCLEQDQVLARLGGDEFLVLAPNTSQSALEAMASRILTRLRQPFRIGLIEVYTGCSIGI
SLSPQHGSDSAAIIRHADTAMYSAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNVSARQLADQTIFTDLKQVLQELKFEYCPIDVELTESCLIEND
QLALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgttagggagtccacaacgttgtacaactttctcggctcgcacaacccatac
tggcggttgtcggaaaacagtgatgttttgcgcttttccaccactgaaacaacagaacct
gaacgtactctgcagttatctgccgaacaggctgctcgtatccgggaaatgacggtcatc
acctccagcctgatgatgagcctgacagtcgatgagagcgacctttctgtccatctggtg
ggacgaaaaatcaataagcgcgaatggggtggcaacgcgtcggcatggcatgacacacca
gcggttgctcgtgatttatcacacggactttcctttgctgaacaggtggtttctgaagca
cattccgcaatagtgattctggatagccgagggaatatccagcgttttaatcggttatgc
gaagaatacacagggctgaaagaacacgatgtcattgggcaaagtgtgtttaaattgttt
atgagtcgccgtgaagccgcgatctcccggcgtaacaacagcagtttttttcgtagtggc
aacgcctatgaagtcgagcgttgggtacagacgcgcaaaggtcagcgactgtttctgttt
cgcaacaaatttgtccacagcggtagcggcaaaaatgagatctatttaatttgttccggc
accgatatcaccgaagaacgtcacgcccaggaacgattgcgaatcctggctaacactgac
agcatcaccgggctaccgaatcgtaacgcaatgcaggaattaatcgactacgccattaat
gaggccgacgagggtaaagtcggagtggtttatctcgatttagacaattttaaaaaagtg
aacgatgcctacgggcatttgtttggcgaccagctgttacgcgaggtttcactggctatt
ttaagctgtcttgagcaggatcaggtgttagcacgtcttggcggcgatgaatttctggta
ctcgcaccaaacacctcgcaaagtgccctggaagcaatggcatcgcggattttgacccgc
ctgcgccaaccctttcgcatcggtttaatcgaagtttataccggctgttcaattggtatt
tcactttcaccgcaacatggctcagacagcgcggcgattattcgccatgccgatacggca
atgtacagtgccaaagaaggcggacgaggacaattttgcgtcttttcgccggaaatgaat
caacgggtattcgaatatctgtggttggataccaacctgcgtaaagctctggaaaacgat
cagttagttattcactaccagccgaaaatcacctggcggggtgaagtacgcagtctggaa
gccctggtacgctggcagtctcccgaacgtggcttaattccccctctggactttatttcc
tatgccgaagagtccggtctgattgtgcctctaggccgttgggttattctcgacgtcgtg
cgccaggtagcaaaatggcgagataaaggcattaatcttcgggttgcggtgaatgtctca
gcacgccaacttgccgatcaaaccattttcactgacctgaaacaggtactccaggaactt
aaatttgagtattgccctattgatgtcgagctgactgaaagctgtctgattgaaaacgat
cagttggcgctttccgttattcagcaattcagtcaattaggcgcacaggttcatctggat
gatttcggcacgggttactcttctctttcccaactggcacgattccccatcgatgctata
aaactcgaccaggtttttgtccgtgatattcacaaacagccagtctcgcagtcgctggta
cgtgcgatcgtcgccgtggctcaggcgctcaatcttcaggtgattgccgaaggtgtagag
agtgcaaaagaagatgcctttttgaccaaaaatggcatcaatgagagacaaggatttttg
tttgctaaaccgatgcctgccgtggcttttgaacgctggtataaacgttatctgaagcgc
gcataa
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