Aurantiacibacter atlanticus: CP97_13080
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Entry
CP97_13080 CDS
T03997
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ery
Aurantiacibacter atlanticus
Pathway
ery03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP97_13080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ery03400
]
CP97_13080
Enzymes [BR:
ery01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP97_13080
DNA repair and recombination proteins [BR:
ery03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP97_13080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKQ42770
UniProt:
A0A0H4VEJ1
LinkDB
All DBs
Position
complement(2665914..2668439)
Genome browser
AA seq
841 aa
AA seq
DB search
MARKKAPSDPLATYNAKRDFDKTPEPAGAKGSSKGGNLFIVQKHDATRLHWDLRLEIDGV
LKSWAVTKGPSLDPDIKRLAVRTEDHPMFYAEFEGTIPKGEYGGGTIMLWDRGSWAPIEG
KSAKDMEKGHLHFTLDGERMRGEWLLIRLKQKPGEKRENWLLRKLNDEHAGTGDALVQRA
LTSVLTGRSMAEIGADKEGSFSLQNKKDDAFLQQMEKAADHNRGKVKRRKASPKTLPKFR
KPQLATLVDDVPAGNGWMHEIKFDGYRAMVAVAGNEVRIYTRNGKDWTDKFLPLTRHLSA
LELPACLIDGEIVAHDADGNPDFSTLQKTLKRGHGAQGEGDKLAFHAFDLVELAGEDLSA
LSNIERKERLEALLSGAEPPIHVADHIIGAGEKLYRAMCVAGQEGIISKKIDAPYRSRRS
KAWVKVKCTRRQEFVIIGWKASSARGRPFASLLLAQHEGDALVYKGNVGTGFSGEDLEML
AAKMKRLERKTAPAEVDTTSSRKVTWLTPKLVAEIAFSEFTADGNVRHGSFLGLRDDKKA
SAVKPEEPAKAPAPDTGIKISSRERVIFPDSGQTKGELADYYEKIGPIMLPFLASRPVSL
VRCPQGRARKCFFQKHDSGSFGPHVHQIPIREKDGGTEDYLYIEDTPGILACVQMGSIEF
HGWGSRSSDVEAPDKMVFDLDPDEDLDFAAVKSAATDLRDRLSDLGLVSFAMLSGGKGVH
VVVPLTPGHDWDTHKDFARRFSEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAV
LPYSARARSGAPVAAPVTWNELKTIDAANIYTIDDAQKLTSRASSKTLSGWGFANQALPG
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaagaaagccccttccgatccgctcgccacatacaatgccaagcgtgatttc
gacaagacgccagagccggcgggcgcaaagggaagcagcaagggtggcaacctcttcatc
gtccagaaacacgatgcaacgcgattgcattgggaccttcggctggaaatagatggcgtg
ctgaaaagctgggcggtcaccaaggggccgtccctcgatcccgatatcaagcgccttgcc
gtgcgcaccgaagatcaccccatgttctatgccgaatttgaagggactattcccaagggc
gaatatggcggtggcacaatcatgttgtgggatcgcggaagctgggcgcccattgaaggc
aaaagtgccaaggacatggaaaagggccatctccatttcaccctggatggagaacggatg
cgcggcgaatggctgctgatccgcctgaaacagaagcccggcgaaaagcgcgaaaactgg
cttttgcggaagttgaacgatgagcacgcaggcactggagatgcgctggttcagcgcgca
ttgaccagtgtgctgacaggccgttccatggcggaaattggcgccgacaaggaaggcagt
ttcagtcttcagaacaagaaggacgatgcctttctgcagcagatggaaaaggcggcagac
cacaatcgcggcaaggtgaagaggcgaaaggccagcccgaaaacgctgcccaaatttcgt
aaaccccagcttgccacactggtggatgatgtgcccgctggcaatggctggatgcacgag
atcaagtttgacggttaccgcgcgatggtggccgtggctggcaatgaagtgcgcatatat
acccgcaacggcaaggattggactgacaaattcctcccgctcacccgccatctctctgcg
ctggaattgccggcctgccttatcgatggcgagatcgtggcgcatgacgctgatggcaat
cccgatttttctaccttgcaaaaaacactgaagcgcggccacggcgcgcagggcgagggc
gacaagctggccttccacgcttttgatctggtggaactggcaggagaagatctttccgcc
ctgtctaatattgaacgcaaggaaaggctcgaagcgcttttgagcggggcagagccgcca
attcacgtggcggatcacatcattggcgccggagagaaactttaccgggcaatgtgtgtt
gcagggcaggaaggcatcatctccaagaagatagatgccccctaccgttcccgacggagc
aaggcatgggtcaaggtcaaatgcacgcggcggcaggaattcgtgatcattggatggaag
gcgtcttcggcaagaggccgcccctttgcttcgctccttctcgcccagcatgaaggcgat
gcgcttgtttacaagggcaatgtgggaacggggttctcaggcgaggatcttgaaatgctg
gccgcaaagatgaagcgtctcgaacgcaagaccgcccctgccgaggtggacacaacatcc
agccgcaaggtgacgtggctgacgccaaaactggttgccgaaattgccttcagcgaattc
actgccgacggcaatgtgagacacggcagctttctcggcctgcgcgatgacaagaaggcc
agcgccgtcaaacccgaagaacccgcgaaggctcctgcgcctgatacaggcatcaagatt
tccagccgcgagcgggtcatcttccccgatagcggccagaccaagggtgaacttgccgat
tattacgagaagatcggcccgattatgctgcccttccttgccagccgcccagtcagcctg
gtgcggtgtccgcaggggcgcgcacgcaaatgcttttttcagaaacacgacagcggtagc
tttggtccgcatgtccaccagattccaatcagggaaaaggacggcggcacggaagactat
ctctatatcgaggacacacccggcatactcgcctgcgtgcagatgggttcgatagaattc
catggctggggtagccgaagcagcgatgtcgaagcgccagacaagatggtgttcgacctt
gaccccgatgaggaccttgatttcgcagcggtgaaatcagccgcaaccgacttgcgcgat
cgcctgtctgatctgggtcttgtgagctttgccatgctgtcaggcgggaagggggtccat
gtcgtggtgccactgacgccagggcatgattgggacacgcacaaggatttcgcccgccgc
ttttcagaggcgctgagccttgccgagcctgaccgctttaccgccacgatgagcaaggcc
aagcgcaagggcaaaatctttatcgattggctaagaaatcagcgcggcagcactgcagtc
ttgccctattctgcgcgggcacgcagcggcgccccggttgcggcccctgtcacgtggaac
gaattaaagactatcgacgcggctaatatctatactatcgacgatgcgcagaagctgacc
tcccgtgcatcgtcgaaaacgctgtcgggctggggctttgccaatcaggcgttgccgggc
ctctag
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