Exiguobacterium sibiricum: Exig_0088
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Entry
Exig_0088 CDS
T00687
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
esi
Exiguobacterium sibiricum
Pathway
esi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
esi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Exig_0088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esi03021
]
Exig_0088
03400 DNA repair and recombination proteins [BR:
esi03400
]
Exig_0088
Enzymes [BR:
esi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Exig_0088
Transcription machinery [BR:
esi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Exig_0088
DNA repair and recombination proteins [BR:
esi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Exig_0088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACB59575
UniProt:
B1YGU2
LinkDB
All DBs
Position
112308..115865
Genome browser
AA seq
1185 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTNSYEWFLREGLREMFHDISPISDFTG
NLVLEFIDYSLGEPKYSIDESKERDVTYSAPLRVKVRLQNKETGELKEQEVFMGDFPLMT
ESGTFIINGAERVIVSQLVRSPSVYYNNKLDKNGKRGFSATVIPNRGAWLELETDAKDIV
YVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYLRNSLEKDNTETTEKALIEIYERL
RPGEPPTVENAKALLVSRFFDPKRYDLANVGRCKINKKLHLKNRLFGQKLAETLVDPETG
EVIAEEGTVLDRRMLDKVLPFLEGSVGYIEATPTGGVTQGEAFNLQSIKVFAPDDAEGER
IINIIGNGNIDRDIKHITPADMIAAINYFFNLLHEVGTTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAE
LTHKRRLSALGPGGLTRERAGFEVRDVHYSHYSRMCPIETPEGPNIGLINSLSSFAKVNE
YGFIEAPYRRVDPETGVVTNEIHYMTADEEDLYVVAQANMLLTEEKTFQDTHVLSRFRGQ
NLSVEPARVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLDPESPIVG
TGMEYVSAKDSGAAVVAKHSGIAERVTAREILVRRTTEVDGNIVQGELDRYKIQKFIRSN
QGTCYNQKPIIKVGDPVDKGEILADGPSMDGGELALGRNVLVGFMTWDGYNYEDAVIMSE
RLVKDDVYTSIHIEEYECESRDTKLGPEEITRDIPNVGDDALKNLDDRGIIRVGAEVKDG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIILDVKIFDRDNGD
ELSPGVNQLIRAYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYMPDGTPIDIMLNP
LGVPSRMNIGQLLELHLGMAARQLGIKVASPVFDGAREEDVWATIEEAGMDRDAKTILYD
GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDTIGRVKAYEAIVKGENVPQPGVPESFRVLIKELQSLG
MDVKMMSAEDEEIEMKDDDEDNIPNATPALEEVQAPVAPVVTEEE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgactggtcaacttgttcagtacggtcgtcaccgtcagagaagaagctatgcacgtatc
agcgaagttctagaacttccaaaccttattgagattcaaacgaattcatacgaatggttc
ttgcgggaaggtcttcgtgagatgtttcatgatatctcgccgatttctgactttacggga
aatctcgtattagaattcatcgactactcgctcggagagccgaagtattcgattgatgaa
tcaaaagagcgcgatgtgacctattcggcaccactacgcgtaaaagtccgtcttcaaaac
aaagagacgggtgaattgaaggaacaagaagtatttatgggtgacttcccgcttatgacg
gagtcgggaacattcattattaatggtgcggaacgagttatcgtttcccagcttgttcgt
tcgccaagtgtgtattacaacaataagttagataaaaacggtaaacgtggattttcggca
acggtcatcccgaaccgtggagcatggctcgaacttgagacagatgcgaaagatatcgta
tacgtccgaatcgaccgcacgcgtaagattccagtaacggttcttttacgtgctcttggt
ttcggtacggatcaggaaatcatcgatctccttggagatgatgagtacctccgtaactcc
cttgaaaaagataatacagaaacaacggaaaaagccctcatcgagatttatgagcgtctg
cgtccgggagagccaccgactgtcgaaaatgcgaaagcacttctcgtgtcacggttcttt
gacccgaaacgttatgatttggcaaacgttggtcgttgtaaaatcaataagaagcttcat
ctgaagaatcgtctgttcgggcaaaaactggcggaaacgcttgtcgatccggaaacaggc
gaagtaatcgcagaagaaggaacagttcttgaccgtcgtatgctcgacaaagtcttgcca
ttccttgaaggatctgtcggttacatcgaagcgacgccaactggcggagtaacgcaaggc
gaagccttcaacttacaatcgatcaaggtgttcgcaccggacgatgctgaaggtgaacgc
atcatcaatatcatcggtaacggtaacatcgatcgtgacatcaagcacatcacgcctgct
gacatgattgctgcgatcaactatttcttcaacttgttgcatgaagtaggaacgacagac
gatatcgaccacctcggtaaccgtcgtctccgttcagtcggtgaattgctccaaaaccag
ttccggatcgggctttcccgtatggagcgtgtcgttaaggagcgaatgtcgattcaagac
cagaatgcgatcacgccgcaggcattgatcaacattcgtcctgttatcgcatcgattaaa
gagttcttcggtagctcgcaattatcacagttcatggaccaaacgaacccgcttgctgag
ttgacgcacaaacgtcgtctatctgcactcggacccggtggtcttacacgtgagcgcgct
ggctttgaagttcgagatgttcactactcgcactattcccgtatgtgtccaatcgaaacg
ccggagggtccgaacatcgggctgatcaactcactgtcttcgttcgcgaaagtcaatgag
tatggtttcatcgaagcgccataccgtcgtgtcgatccggaaacgggtgtcgtcacgaat
gaaattcactacatgacggccgacgaagaggatctctacgtcgtcgcacaggcaaacatg
ttgttgacggaagagaagacgttccaagatacacacgtcttgtcacgtttccgcggacaa
aacttgtctgtcgaaccagctcgtgtcgattacatggacgtttcaccgaaacaggttgtt
tcggcagcgacggcatgtatcccgttcttagagaacgatgactcgaaccgtgccctcatg
ggagcgaacatgcaacgtcaggccgtacctcttcttgatccggaatcaccaatcgttggt
accggtatggagtacgtgtctgcaaaagactcaggggctgccgttgttgcaaaacattca
ggtatcgctgagcgtgtaacggcacgtgaaatccttgtccgtcgtacgacggaagtcgat
ggcaacatcgttcaaggtgagcttgaccgctacaagatccaaaaattcatccgttctaac
caaggaacgtgctataaccaaaaaccaatcatcaaagtaggagatcctgtcgataaaggc
gagatccttgcagatggtccatcgatggacggtggggaacttgcgcttggtcgtaacgta
ctcgtcggtttcatgacatgggatggttacaactacgaggatgctgtcatcatgagcgaa
cgtctcgtgaaagacgacgtctacacgtcgatccacattgaagagtatgagtgtgaatca
cgtgatacaaaactcggaccggaagagatcacgcgtgacattccgaacgtcggcgacgac
gccctgaaaaacctcgacgaccgcggaatcatccgtgtcggtgctgaagtaaaagacggg
gatatcctagtcggtaaagttacacctaagggcgtaacggaattgacggctgaagaacgc
ctgcttcatgcaatcttcggtgaaaaagcacgtgaagtccgtgatacgtcacttcgtgtt
ccacacggcggcgacggcatcatccttgacgtgaaaatcttcgatcgtgataacggcgac
gagctgtcacctggtgtcaaccagttgatccgtgcgtacatcgttcagaagcgtaagatt
cacgaaggagataaaatggctggacgtcacggtaacaaaggtgttatctcacgtatcctg
ccagaagaagacatgccgtacatgccagacggcacaccaatcgacatcatgttgaaccca
cttggtgtaccatcgcggatgaacatcgggcagttgctcgagcttcaccttggtatggct
gcacgccaactcggaatcaaagtcgcatcaccggtattcgatggtgcacgtgaggaagat
gtttgggcaacgattgaagaagccggtatggaccgcgacgctaaaacgatcctgtatgat
ggacgttctggtgaagccttcgataaccgcatctcggttggtgtcatgtatatgatcaaa
ctcgcccacatggtcgatgataaacttcacgcacgttcgacgggtccttactcgctcgtt
acgcagcagccgctaggtggtaaagcccagttcggtggacagcgtttcggtgagatggaa
gtatgggcacttgaagcatacggtgccgcttatacgctccaagagatcctgacaattaaa
tccgatgatacaatcggtcgtgttaaagcatatgaagcgatcgttaaaggcgaaaatgta
ccacaaccgggcgtgccggaatcgttccgagtcctcattaaagagcttcaatcccttggt
atggatgttaagatgatgtctgccgaagatgaagagatcgaaatgaaagacgacgacgag
gacaacatcccgaacgcgactccagcactcgaagaagttcaagcgcctgtcgcaccagtt
gttactgaagaggaataa
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