Sinorhizobium sojae: SJ05684_c14700
Help
Entry
SJ05684_c14700 CDS
T05052
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
esj
Sinorhizobium sojae
Pathway
esj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
esj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJ05684_c14700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esj03400
]
SJ05684_c14700
Enzymes [BR:
esj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJ05684_c14700
DNA repair and recombination proteins [BR:
esj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SJ05684_c14700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASY62917
UniProt:
A0A249PB41
LinkDB
All DBs
Position
1417213..1420719
Genome browser
AA seq
1168 aa
AA seq
DB search
MIPGLDAKRIVAATREVTIGPVPSGAEALILADLARAGTPVAYFLSDGQRIADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADISARRLAALSALIAHREKPHPAIVLVTVNAALQK
ISPRQVIEGLAFSARPGNQVRMDDLAARLERNGFERVPTVREVGEFAVRGGILDVYVPGG
GEPLRLDFFGDTLETIRSFDPVSQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERAKL
ILDYYDARLVSASPGKTQLSQGTPYKPVPAELLYLGADGFGAALTERSAVRLSPFTEHEG
EARQFVTVEARQGLRWAKAVGEESDGERANVFDQAVKHIAEKRAKGAKVVISGWTEGSLD
RLIQVLAEHGLARIRPIKALSDLGSLKPGEAASAVLSLEAGFEAGDLVIIGEQDILGDRL
VRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELLYADNA
KLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTR
HAPVLVAHDGVYDEFAARFPYDETEDQLNSIDAVRDDLGSGRPMDRLVCGDVGFGKTEVA
LRAAFIAAMNGVQVAVVVPTTLLARQHFKTFAERFRGLPVRIQQASRLVGSKELALTKKE
VGDGKTDIVIGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDIHVLTLSATP
IPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPR
VSDLSDVHEFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGLYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEILDTGWS
PQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPIEVQHLL
KIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFF
QRELATPEKRLSGAAMVMTQLAGLAKAG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgatacctggcctcgacgcgaagaggattgtggcggcaacacgggaagtgacgatcggg
ccggtgccctccggcgccgaggcgctgatccttgcggacctggcgcgggccggaacgccc
gtcgcctatttcctttccgacggccagcgcatcgccgatctcgagcaggtcctcggcttc
gtggcgcccgacatccccgtcctgacgctgccgggctgggactgcctgccttacgaccgc
gtgtcgccgagtgccgatatctcggcgcggaggctcgcggcgctgagcgcgctcatcgcg
catcgggaaaagccgcatccggcgatcgtgctcgtcaccgtcaacgccgcgcttcagaag
atttcgccgcggcaggtgatcgagggtctcgccttttcggcgcggccgggcaaccaggtg
cgcatggacgatctcgccgcgcggctggagcgaaacggattcgagcgcgttccgaccgtg
cgcgaggttggcgagtttgccgtgcggggcggcattctcgacgtctacgtgcccggcggc
ggcgagccgctgcgtctcgatttcttcggtgacacgctggaaacgatccgctccttcgat
ccggtcagccagcgcacgacggggcaggtgcgttccctcgatctcaatccaatgagcgaa
gtgtcgctgacgccggagaccatcagccatttccgcaagcagtatctctcgctcttcggc
gcggcgacgcgcgatgatgcgctttaccaggccgtctccgaagggcgccgctatgccggc
atggagcattggctgccgctcttctacgatcgcctggaaacggttttcgattacctcgac
ggcttccgtatcgtcacggatcacctggcccgcgaagcggccgcggaacgcgcgaagctg
atcctcgactactatgacgcgcggctcgtatccgcatctccgggcaagacgcagctctcc
cagggcacgccctacaagcccgtgccggcggaacttctctatctcggcgccgacgggttt
ggcgcggcattgaccgagcgaagcgccgtgcgcctctcgcccttcaccgaacatgagggg
gaggcgcgccagttcgttaccgtcgaagcgcgtcagggcctgcgctgggccaaggctgta
ggggaggagagtgacggcgaacgcgccaacgtcttcgaccaggcggtcaagcatatcgcc
gaaaagcgggcgaagggggcgaaggtcgtcatttccggttggacggaaggatcgctcgac
cggctcatccaggttcttgccgagcatggccttgccaggatacgtccgatcaaggcgctg
tcagatctcggctcgctgaagccgggcgaggcggcgtccgcggtcctcagcctcgaagcg
ggtttcgaagccggcgatctcgtgatcatcggcgagcaggacattctcggcgaccgcctg
gtacgccggtcgaagcgccgcaagcgcggcgccgatttcattgccgaggtgaccggcctc
gacgagggcagctatgtcgtgcatgcggaacacggcatcggccgctttgtcggcctgcgc
acgatcgaggccgccggcgcgccgcatgactgcctcgagctcctctatgccgacaacgcc
aagctcttcctgccggtggaaaatatcgagcttctgtcgcgctacggctcggaaggcacc
gacgccatcctcgacaagctcggcggcgtcgcctggcaggcccgcaaggccaagctcaag
aagcggctgctcgacatggccggcggccttatccgcattgccgccgaacggcacacgcgt
cacgccccggttctcgtggcgcatgacggggtctatgacgaattcgcagcgcgcttcccc
tatgacgagaccgaggaccagttgaactcgatcgatgcggttcgcgacgacctcggcagc
ggccggccgatggaccgcctggtctgcggcgatgtcggattcggcaagacggaggtggcg
ctgcgcgccgccttcattgcggcaatgaacggcgttcaggttgccgtcgtcgtgccgacg
accttgctggcgcggcagcatttcaagaccttcgccgagcgtttccgcggtctgccggtg
cgcatccagcaggcgtcccggcttgtcggctcgaaggagcttgcgctgaccaagaaggaa
gtcggggacggtaagaccgacattgtcatcggcacccatgcgctgctcggttcttcgatc
aagttcgccaatctcggcctgctcatcatcgacgaagagcagcatttcggcgtcaagcac
aaggagcggctcaaggagctgaagaccgacatccatgtgctgacgttatcggcgacgccg
attccgcgcacgctgcagttggcattgaccggcgttcgcgaattgtcgctgatcaccacg
ccgccggtcgatcgcatggcggtgcgcaccttcatctcgcccttcgatgcgctggtgatc
cgcgagaccctcatgcgcgagcactaccgcggcggccagagcttttacgtctgcccccgg
gtgagcgacctctccgatgttcacgaattcctgaaatccgacgtgcccgaattgaaggtc
gcggtggcgcacggccagatgccggcaaccgaactcgaggacatcatgaacgccttctat
gagggcctctatgacgtgcttctctcgacgacgatcgtcgaatcgggtctcgacgtgccg
accgccaacacgttgatcgtccaccgcgcagacatgttcggccttgcccagctctaccag
ctgcgcggccgggtcgggcgttcgaaggtgcgcgccttcgcgctcttcacgctgcccgtc
aacaagacgctgacggggccggcggagcgcagactgaaggtgctgcagtcgctcgacacg
ctcggtgccggcttccagcttgcgagccacgacctcgacattcgcggcgcgggcaatctg
ctcggcgaagagcagtccggccatatcaaggaggtcggcttcgagctttaccagcagatg
ctcgaggaggcggtcgccgaactcaagggcgaggaggagatcctcgataccggctggtcg
ccgcagatctcggtcgggacgccggtgatgatcccggaagaatatgtgcccgatctcaat
ctccgcctcggcctctatcggcgtctcggcgaactgacggacctcaaggaaatcgacggc
ttcggcgccgaattgatcgaccgcttcggcccgctgccgattgaggtccagcacctcctg
aagatcgtctatatcaagtcgctgtgccgcacggccaatgtcgaaaagctcgatgccggg
cctaagggcgtcgtcgtccagttccgcaacaaggagttccccaacccggctgccctcgtc
ggctatatcgccaagcaggggacggtcgccaagatccggccggatcagagcattttcttc
cagcgtgagcttgcaacgccggagaagcggctttcgggcgccgccatggtgatgacccag
cttgccgggcttgccaaggcgggctga
DBGET
integrated database retrieval system
