Eriocheir sinensis (Chinese mitten crab): 127001641
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Entry
127001641 CDS
T08870
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
esn
Eriocheir sinensis (Chinese mitten crab)
Pathway
esn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
esn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127001641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esn03400
]
127001641
Enzymes [BR:
esn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127001641
DNA repair and recombination proteins [BR:
esn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127001641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
mRNA_cap_enzyme
DNA_ligase_IV
YfeC-like
Motif
Other DBs
NCBI-GeneID:
127001641
NCBI-ProteinID:
XP_050722505
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All DBs
Position
21:9905881..9928940
Genome browser
AA seq
911 aa
AA seq
DB search
MLLLLQLLTSSSTPLSSTSRAARMTTPPLASVIPWEHVCRMLEKVQGVPRAKKKEMLLKF
ITTFRELHKKKLQHQPDCTDTFFPVMRVLLPALDRARGAYGVKERRLADLYIRILGLKKD
GSDAQKLIHFRKPKASAGGESGDFAEVAYYVLRNRCPEKGNLSLLEVDEHLTSIAENHAA
KKNDEVERSLLEMLKGMSAKEQKWLLRVLLKDMRLGIGQTLIFNAWHPDAKDYYDVTNSL
EKVCRTLQDPSVRLHEVEVSLFAPFRPMLAQRAVLEKVEAQMNHKMYFAETKYDGERSQI
HKRAGDYKYFSRNGFDFTTNFGADRHSGLFTPHLHPHLAPHVKEVILDGEMVGWSQAHRV
IVSKGDHMDVKNLKEDGDWQVCFCAFDILYLNGTVLTNKPLSERLEILRTVINPAEGRVI
ISATAKVKSRDEVVSVLNEAIDRREEGVVLKDPDSVYQPAARRAGWIKVKPEYVDSLVPE
LDLVIVGAYYGKGSHQGVLSHFLLGVAMPSENPGSHPNTFHSFSRVGSGYTVDELKDLLE
KLKPNTRSRQPLSVVVTGREKQPDVWVEPRKSFVVQVRAAEVVKSDLYRCGLTLRFPRVE
HVRYDKPWHQALTITELKELAQEASGKLAVKHCAGADLEEGKGAKRRAVMVAAGPSLPLH
FRPADVSAAVKKDEVFGGLEMCVMGGDEEMGKQALETLVVEHGGRITQHPGPITHCIIAN
TPTVRVQSYIKSSKHNVIHPSWLRASCGSGRLLPWGPLDVLHLREKEKCAMEELFDPYGD
SFTEPTNGRMIKRVMEAMGKETWKPLSPDEMSEMDEKLVDLGDTRALFRRVNGCFYGDVD
DKVAALTLQLHGGTLTTSPASATHLIARNESEVRASEVEGRYLVTCEWIYASVEHGKRLE
ERGYMPRLVAG
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgctccttcaactgttaaccagctcatccacacccttatcatccacctctagg
gctgccaggatgacgacacctccgctagcatccgtcattccctgggagcatgtctgtcgg
atgctggagaaggttcagggggtgccgcgggccaagaagaaggagatgcttcttaaattc
atcacaacgtttagagaactgcataagaaaaagctacagcatcagccagactgtactgac
acattcttcccggtgatgcgagtgctgctgccggcgctggatagggcacgcggggcctac
ggggtgaaggagcgcaggctggctgacctctacatccgcatcctcggactaaagaaggat
gggagtgatgcacagaaactcatccactttcgcaagcccaaagcctcagcagggggagaa
tcaggggactttgccgaggtcgcttactatgtgctgaggaaccgctgtccagagaagggg
aacttgagtctactggaggttgacgaacacctgacctccatcgctgaaaaccacgcagcc
aagaaaaatgatgaggtagagcgctccctgctggaaatgctgaaggggatgtcggctaag
gaacagaagtggctgctgcgggtgcttctcaaggacatgcgactcggcatcggacagacc
ctcatcttcaacgcctggcaccccgacgcgaaggattactacgatgttaccaatagcctt
gagaaggtgtgcaggaccctgcaggacccttccgttcgcctgcatgaggtggaggtgtcc
ctgtttgcacccttccgccctatgctggcacagcgggcggtgctggagaaggtggaggcc
cagatgaaccacaagatgtactttgcagagaccaagtacgatggagaacgctcacagata
cacaagagggcgggagactacaagtatttctcgaggaatggttttgacttcaccaccaac
tttggggctgaccgtcactctgggctcttcaccccccacctccacccccacctggcaccc
cacgtgaaggaggttatcctggacggggagatggtggggtggagccaggcacaccgcgtc
atcgtgtccaagggtgatcacatggacgtgaagaaccttaaagaggacggtgattggcag
gtgtgtttctgtgccttcgacatcctctaccttaatggcacggtgctgactaacaagccc
ctgtcggaacgcttggagatcctgaggacggtgatcaaccctgcggaaggtcgggtcatc
atatcagccactgccaaggtcaaatcaagggatgaggtggtgtcggtactgaacgaggca
atagacaggcgtgaggagggtgtcgtgttgaaggaccccgacagtgtgtatcagccagct
gcaaggagggccggctggattaaggtgaagccagagtatgtggactccctagtacctgag
ttggacctggtcattgtgggtgcctactatgggaagggcagccaccagggagtgctgtca
cacttcctgctgggggtggctatgccctcggaaaaccccggcagccatccaaacacattc
cactcattcagtcgtgtagggtcaggctacacggtggatgagctgaaggacctcttggag
aagctgaagcccaacactcgcagccgccagcccctcagcgtggttgtgacggggcgggag
aagcagccagatgtgtgggtggagccacgcaagtcttttgtggtgcaggttagggcagca
gaagtggtgaagagtgacctttaccggtgcgggttgaccctccgcttcccgagggtggaa
cacgtccgctacgacaagccgtggcaccaggcacttaccatcaccgaactgaaggagctg
gcgcaggaggcgagtggcaaattggcggtgaagcactgtgcaggagctgacctggaagag
gggaagggggcgaaaagaagggccgtgatggtggcagcaggcccttcactaccccttcac
ttcagacccgccgatgtgtctgctgctgtgaagaaggatgaggtctttggaggcttggag
atgtgcgtgatgggtggggacgaggagatggggaagcaagccctggagaccctggtggtg
gagcatggaggcaggatcacccagcacccaggccccatcacccactgcatcatcgccaac
acccccaccgtccgtgtccagtcctacatcaagtcgtccaaacacaatgtcatccacccc
tcctggttgagagcctcctgtggcagcgggcgtctccttccgtgggggcccctcgacgtc
ctgcacctaagggagaaggagaagtgtgccatggaggagttgtttgacccctacggcgat
agttttacggaacccaccaatggaaggatgatcaagagggtgatggaggcgatgggaaag
gagacatggaagcccctgtccccggatgagatgagtgaaatggatgagaagctggttgac
ttgggtgacaccagggcgctcttcaggagggtcaacggttgcttctatggagatgtggat
gacaaagtagcagctctcacccttcagctacacggaggcaccctcaccacctcacccgcc
tcagccactcacctcattgccaggaatgagagtgaggtgcgagccagtgaggtggagggg
agatatctggtgacctgtgagtggatctacgccagtgtggagcacggcaagaggctggag
gagagggggtacatgcctaggttggtggcaggctga
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